Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq36 107 2e-18 seq32 89.7 5e-13 seq21 87.8 2e-12 >seq36 Length=1779304 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 71642 TATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAG 71701 ||||| ||| | |||||||||| || || |||||||| |||||||| | || || Sbjct 1521862 TATAGCTTAGAGGAATTCGAGCAGGCTCGTACCCATGATGATTTATGGAATTCAGCCCAA 1521803 Query 71702 CGACAGCT-ACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAA 71760 | || | | |||| ||||||||||| ||||| | | || ||||| ||||| ||||| Sbjct 1521802 CTGCAATTGATGCAA-GAGGGTAAAATGCACGGCTTTTTGCGTATGTATTGGGCTAAAAA 1521744 Query 71761 GATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGA 71820 |||| | || ||| || ||| || || | || | || ||| | |||||| || Sbjct 1521743 GATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAAATTTCGCTACTTCTAAATGA 1521684 Query 71821 TAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||||||| | || || ||||| || |||||||||||| Sbjct 1521683 TAGATACAGTTTGGATGGCACGGATCCCAATGGTTATGTCGGT 1521641 >seq32 Length=1919080 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||||||||| |||| || || | ||||| | || | ||| | Sbjct 39423 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 39364 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 39363 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 39304 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| || | |||| || || || ||| | ||||||| | | | ||| || Sbjct 39303 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTA 39244 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||| |||||||||||||| || | ||||| || ||| Sbjct 39243 TAATATTCAAAAAGAATCCACCTTACATCTTGTGCTG 39207 >seq21 Length=2241434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || || || || |||||||||||||||||||| |||| | ||||||||||| ||| Sbjct 1381692 AAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCACTTCT 1381751 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCAACTCTGCCGTTCGT 115314 || || | ||||||||| ||| || | | || || || |||| || | ||| Sbjct 1381752 GCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCATGGAGCACCCACTGATGATGAACGT 1381811 Query 115315 CACGTCGGTGATCTTGGCAATATTGA 115340 || |||||||| | |||||| |||| Sbjct 1381812 CATATCGGTGATTTGGGCAATGTTGA 1381837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652072858720