Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq26 107 5e-18 >seq26 Length=2133956 Score = 107 bits (118), Expect = 5e-18 Identities = 392/603 (65%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAA 111418 ||||| ||||| |||||||| |||| || || |||| || | || ||| | ||||| Sbjct 713005 GAAGAGCTTCTCTGGTTTATAAGCGGCAGCACCGATGCGAAAGTCCTA-CAGAACAAAAA 713063 Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA-GTTGGTCTTGTCG 111477 | | || ||| |||| || | ||||| ||||| ||| | | ||| || | Sbjct 713064 CATTCACATCTGGAATGGTAACGCTAGTCGTGAATTTCTGGATAGATGCGGGTTCAGT-G 713122 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | ||||||||| || | || ||| ||||||| |||||||||||||| ||||| ||| Sbjct 713123 ATCGCGAAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCAC 713182 Query 111538 ACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCA 111597 | || || | ||| | |||| | | ||||| |||||||| || | | | Sbjct 713183 AATATCGTACTTGTCGCGATACTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAA 713242 Query 111598 TTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 || | | | ||| || || || || ||| || || ||| || | ||||||||| Sbjct 713243 TT-AGGACAATAACTACAAATCCTACAGATCGGCGTATGATTTTGTCCTCTTGGAACCCA 713301 Query 111657 AATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACAC 111716 | | ||||||||| | ||||| || ||| || |||||| |||||| | Sbjct 713302 GTAGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTATGTAGCC 713361 Query 111717 GACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 | ||| ||||| ||| | |||||||| ||| ||||| || || ||||| || Sbjct 713362 AATAATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCA 713421 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 |||||||| ||| || ||| || | || | | || || ||| | || || ||| Sbjct 713422 TTTAATATAGCATCGTATGCATTATTAACGTCTATGATTGCACATCTAACCGGCCTAAAA 713481 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA 111896 || || || || | ||| || ||| ||| |||| |||| | || || || | || Sbjct 713482 CCAGGCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCA 713541 Query 111897 CTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAATAACATG 111956 | ||| || || | |||||||| | | ||||| | ||| ||| || ||| || Sbjct 713542 TTGAAAGAGCAATTAACACGCAAACCGCATGCATTCCCTA-AATTGATAATAA-AACGTG 713599 Query 111957 CCG 111959 ||| Sbjct 713600 CCG 713602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303324777149732