Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 seq2 98.7 9e-16 seq162 87.8 2e-12 seq21 84.2 2e-11 >seq32 Length=1919080 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||||||||| |||| || || | || || | || ||||| | Sbjct 39423 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 39364 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 39363 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 39304 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || || |||||| || || |||||| | ||||||| | | | | |||||| Sbjct 39303 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTA 39244 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| || | ||| | ||| | | ||| |||| ||| Sbjct 39243 TAATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGA 39192 >seq2 Length=5618958 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || || ||||| | ||||| ||| | ||||| | ||||| ||| | Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| || || | ||||| || ||| || ||||||||||| ||||| ||| Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTA 24166 ||||| | |||| | || ||||||||| | ||||||| | |||| | ||| || Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCG-CACGTTATCCGACTA 3063923 Query 24167 TAACATTCAAAAAGAATCTAC 24187 |||||| ||||| || || || Sbjct 3063922 TAACATACAAAAGGAGTCGAC 3063902 >seq162 Length=626193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 673/1067 (63%), Gaps = 52/1067 (5%) Strand=Plus/Minus Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258 ||| ||||| |||| | | ||||| || | || | |||| || | ||| ||| Sbjct 500594 ATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGT 500535 Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318 | ||||| || || || ||||| || | |||||||| || | ||||| ||||| Sbjct 500534 GTATGGCTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 500475 Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCA 132378 || | | || |||||||||| || | | || | | |||||| || ||| Sbjct 500474 AGCTACTAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCA 500415 Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCT--A 132436 ||||| |||||| | | | | ||| ||||| |||| | || || || ||| | Sbjct 500414 ATTCCATAGATCAGTAG---GCGTTTTATCCCACATATCATATTG--AAGGATAGCTTTA 500360 Query 132437 CTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCT- 132495 || | ||| || | ||| | ||||| | | || | |||||| | ||| || Sbjct 500359 CTAACTGGACTACCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTA 500300 Query 132496 CTGACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTG 132555 | || || |||| ||||| || || || | |||| | |||| || || | Sbjct 500299 CCTTCTAAGT-CACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATT 500241 Query 132556 TTGACTGTCGTAGGGCAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCC 132612 || || || ||||| || ||||||| | || || |||| ||| || | ||| Sbjct 500240 TTCGCTTTCATAGGGGTAACGCATTAAAATC---AGTGCGTCAGCAAATCCTTGGACGCC 500184 Query 132613 GATACCGATGGGTCTATGTTTAAAATTCGA--TACTTGTGCGCTAGTCAGCGGATAAAAG 132670 | ||| || || | ||| |||||| || | || || | | || |||||| | Sbjct 500183 TAAACCAATTGGACGATGACGAAAATTAGACTTTCTGGTTTCC--GGCAACGGATAGTAA 500126 Query 132671 TTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGAT 132730 || | || |||||||| ||||| || || || | || | || |||| | || Sbjct 500125 TTGATATCGATTATTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTG 500066 Query 132731 TCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAA 132790 | ||| ||| | | |||| || | ||| |||| ||| | ||||| || || ||| Sbjct 500065 TGAAAATCATATTGTTTAT--CTGTCGTTA-CAAACATATTCAACGCAATTGATGCTAAA 500009 Query 132791 TTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTG 132850 ||||| || ||| | |||| | |||| | |||||||||| |||||| |||||| Sbjct 500008 TTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTG 499949 Query 132851 TTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAA 132909 | ||| || | || | |||||| |||| || |||| |||||| | | Sbjct 499948 CATTTTATAGTGCCAACATTCTGTTGATTACTTTTG-CGATTACAAGCATCTTTGTAAAG 499890 Query 132910 CATGTACGGACCTCCGGTTTCGAC-------CTGAATTTCGATAATTTTTCTGTGAAGAT 132962 |||||| ||| |||||| || || ||| || | | || | | || | || Sbjct 499889 CATGTAAGGAGTTCCGGTCTCTACTTGGGCACTGCATATTGCGAACTACTA-GTCACGAG 499831 Query 132963 CT---AACGCCAAAATTTGTTCTTTAAACTTGCCCTGAGTCT-CGTAACTTTC--GTATA 133016 || | | ||||||| | ||||||| |||| | || |||| ||||| Sbjct 499830 CTTTTATTGT-----TTTGTTCGCT----TTGCCCTC-GTCTTCATA--TTTCATGTATA 499783 Query 133017 ATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCA 133076 ||| ||||||| || ||||| || ||| || || || | | |||||||| | Sbjct 499782 ATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTA 499723 Query 133077 ATGACCATTTTTCTCCTGCGCTCACC-CTTTTCATGAACAACGAAGGTGTCCACATGGCA 133135 ||||| | || | || |||| | |||||||||||||| || |||||| ||| Sbjct 499722 GAGACCAATGCTCATCAGC-CTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCA 499664 Query 133136 AAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaa 133195 |||||||||| || || || ||| ||| |||| |||||||| | ||| Sbjct 499663 TAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAAT 499604 Query 133196 gtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242 ||||| ||||||||||||||||| | |||| || ||||| || Sbjct 499603 TCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAAAGCCCC 499557 >seq21 Length=2241434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 101009 TACCTCAAGGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCA 101068 || || | || ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct 1381687 TATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCA 1381746 Query 101069 CGTCTGCGGGCGAACATTTTAACCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCG 101128 | ||||| || | |||||||| ||| | | || || ||||||| || | Sbjct 1381747 CTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCATGGAGCACCCACTGATGATG 1381806 Query 101129 TTCGTCACGTCGGTGATCTTGGCAATATTGA 101159 ||||| |||||||| | |||||| |||| Sbjct 1381807 AACGTCATATCGGTGATTTGGGCAATGTTGA 1381837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926956027530