Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq32 107 2e-18
seq2 98.7 9e-16
seq162 87.8 2e-12
seq21 84.2 2e-11
>seq32
Length=1919080
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | ||||||||||| |||| || || | || || | || ||||| |
Sbjct 39423 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 39364
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| ||||| ||||| | || ||| |||||| |||||||| || || || |||||
Sbjct 39363 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 39304
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|| || || |||||| || || |||||| | ||||||| | | | | ||||||
Sbjct 39303 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTA 39244
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
||| |||||||||||||| || | ||| | ||| | | ||| |||| |||
Sbjct 39243 TAATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGA 39192
>seq2
Length=5618958
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
||||||||| | || || ||||| | ||||| ||| | ||||| | ||||| ||| |
Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||| || || | ||||| || ||| || ||||||||||| ||||| |||
Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTA 24166
||||| | |||| | || ||||||||| | ||||||| | |||| | ||| ||
Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCG-CACGTTATCCGACTA 3063923
Query 24167 TAACATTCAAAAAGAATCTAC 24187
|||||| ||||| || || ||
Sbjct 3063922 TAACATACAAAAGGAGTCGAC 3063902
>seq162
Length=626193
Score = 87.8 bits (96), Expect = 2e-12
Identities = 673/1067 (63%), Gaps = 52/1067 (5%)
Strand=Plus/Minus
Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258
||| ||||| |||| | | ||||| || | || | |||| || | ||| |||
Sbjct 500594 ATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGT 500535
Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318
| ||||| || || || ||||| || | |||||||| || | ||||| |||||
Sbjct 500534 GTATGGCTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 500475
Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCA 132378
|| | | || |||||||||| || | | || | | |||||| || |||
Sbjct 500474 AGCTACTAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCA 500415
Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCT--A 132436
||||| |||||| | | | | ||| ||||| |||| | || || || ||| |
Sbjct 500414 ATTCCATAGATCAGTAG---GCGTTTTATCCCACATATCATATTG--AAGGATAGCTTTA 500360
Query 132437 CTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCT- 132495
|| | ||| || | ||| | ||||| | | || | |||||| | ||| ||
Sbjct 500359 CTAACTGGACTACCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTA 500300
Query 132496 CTGACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTG 132555
| || || |||| ||||| || || || | |||| | |||| || || |
Sbjct 500299 CCTTCTAAGT-CACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATT 500241
Query 132556 TTGACTGTCGTAGGGCAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCC 132612
|| || || ||||| || ||||||| | || || |||| ||| || | |||
Sbjct 500240 TTCGCTTTCATAGGGGTAACGCATTAAAATC---AGTGCGTCAGCAAATCCTTGGACGCC 500184
Query 132613 GATACCGATGGGTCTATGTTTAAAATTCGA--TACTTGTGCGCTAGTCAGCGGATAAAAG 132670
| ||| || || | ||| |||||| || | || || | | || |||||| |
Sbjct 500183 TAAACCAATTGGACGATGACGAAAATTAGACTTTCTGGTTTCC--GGCAACGGATAGTAA 500126
Query 132671 TTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGAT 132730
|| | || |||||||| ||||| || || || | || | || |||| | ||
Sbjct 500125 TTGATATCGATTATTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTG 500066
Query 132731 TCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAA 132790
| ||| ||| | | |||| || | ||| |||| ||| | ||||| || || |||
Sbjct 500065 TGAAAATCATATTGTTTAT--CTGTCGTTA-CAAACATATTCAACGCAATTGATGCTAAA 500009
Query 132791 TTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTG 132850
||||| || ||| | |||| | |||| | |||||||||| |||||| ||||||
Sbjct 500008 TTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTG 499949
Query 132851 TTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAA 132909
| ||| || | || | |||||| |||| || |||| |||||| | |
Sbjct 499948 CATTTTATAGTGCCAACATTCTGTTGATTACTTTTG-CGATTACAAGCATCTTTGTAAAG 499890
Query 132910 CATGTACGGACCTCCGGTTTCGAC-------CTGAATTTCGATAATTTTTCTGTGAAGAT 132962
|||||| ||| |||||| || || ||| || | | || | | || | ||
Sbjct 499889 CATGTAAGGAGTTCCGGTCTCTACTTGGGCACTGCATATTGCGAACTACTA-GTCACGAG 499831
Query 132963 CT---AACGCCAAAATTTGTTCTTTAAACTTGCCCTGAGTCT-CGTAACTTTC--GTATA 133016
|| | | ||||||| | ||||||| |||| | || |||| |||||
Sbjct 499830 CTTTTATTGT-----TTTGTTCGCT----TTGCCCTC-GTCTTCATA--TTTCATGTATA 499783
Query 133017 ATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCA 133076
||| ||||||| || ||||| || ||| || || || | | |||||||| |
Sbjct 499782 ATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTA 499723
Query 133077 ATGACCATTTTTCTCCTGCGCTCACC-CTTTTCATGAACAACGAAGGTGTCCACATGGCA 133135
||||| | || | || |||| | |||||||||||||| || |||||| |||
Sbjct 499722 GAGACCAATGCTCATCAGC-CTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCA 499664
Query 133136 AAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaa 133195
|||||||||| || || || ||| ||| |||| |||||||| | |||
Sbjct 499663 TAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAAT 499604
Query 133196 gtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242
||||| ||||||||||||||||| | |||| || ||||| ||
Sbjct 499603 TCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAAAGCCCC 499557
>seq21
Length=2241434
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 101009 TACCTCAAGGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCA 101068
|| || | || ||||| || |||||||||||||||||||| |||| | ||||||||||
Sbjct 1381687 TATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCA 1381746
Query 101069 CGTCTGCGGGCGAACATTTTAACCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCG 101128
| ||||| || | |||||||| ||| | | || || ||||||| || |
Sbjct 1381747 CTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCATGGAGCACCCACTGATGATG 1381806
Query 101129 TTCGTCACGTCGGTGATCTTGGCAATATTGA 101159
||||| |||||||| | |||||| ||||
Sbjct 1381807 AACGTCATATCGGTGATTTGGGCAATGTTGA 1381837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429926956027530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |