Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq1715 111 4e-20 seq429 95.1 3e-15 >seq1715 Length=1042 Score = 111 bits (122), Expect = 4e-20 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 19066 GTTGATGACGTAGTGAAGATTGCT-CAGGGCATACCGTTAAATGCTGTGGAAGGGAAGAA 19124 |||||||||| | || | || | ||||| || ||| | || || || || || ||| Sbjct 1042 GTTGATGACGCCATTAA-ACTGTTGCAGGGTATCCCGCTCAACGCGGTCGAGGGTAAGCC 984 Query 19125 TGAGCAGACTGGTGGTGATCTGGTTAAGCTGGGGAAAGGTCTGATGCCAGGTGCGAATCT 19184 || || || || || ||||| || ||| | | || || |||| ||||| ||| | Sbjct 983 GGAACAAACCGGGGGCGATCTCGTCAAGTTTGCCAAGGGCATGATCCCAGGGCAAAATTT 924 Query 19185 CTGGTACTTAAAGGCGGCTCTCGATCACATGATCTTTAACCAGATGCAGGAGTATTTTTC 19244 ||||| || |||| || || || ||| ||||||| ||| | ||||| ||||| Sbjct 923 ATGGTATACCAAAGCGGTGCTTGACCATATGGTCTTTAATCAGCTACAGGAAATCTTTTC 864 Query 19245 ACCAGGTTATTTGCGTAAAATGGAGCAACGTTCGAAGAAAGAGTTTAACCAGACATACTG 19304 ||| || ||||| || |||||| | ||||| |||||||||||| || || ||||| Sbjct 863 ACCGGGGTATTTACGCCGAATGGAAAAGCGTTCCCGGAAAGAGTTTAATCAAACCTACTG 804 Query 19305 GTGGCGACCACAGGA 19319 |||||| || ||||| Sbjct 803 GTGGCGTCCGCAGGA 789 >seq429 Length=112147 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/209 (74%), Gaps = 11/209 (5%) Strand=Plus/Minus Query 20279 TTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAA-AAGGACCCGGCGCACCTTTCG 20337 ||||||| || ||| |||||||| ||||||||| |||||||||||| |||| || Sbjct 6407 TTGGTGGCGAGCTGAACAGGGTTGAGACTACCGGCTAAGAAGGACCCGGCGAGCCTTGCG 6348 Query 20338 GTGCCCCCACACAGCCCACCATAATACGAATGTGACCGTGCTATACGCATaaaaaaa--C 20395 | |||||| ||||||||||| || | || || || || ||||||||||||| Sbjct 6347 GCTCCCCCATCCAGCCCACCATTATTCTGATATG-GCGGACT-GACGCATAAAAAAAACA 6290 Query 20396 CGCTTGCGCGGTG-AATGCGCCTT-TTAG-TAACCCGGGACGCCAATCCCGGCACTGGAT 20452 |||| || ||| ||||||||| |||| ||||| ||| | ||| |||| ||| || Sbjct 6289 CGCTCTCGGCGTGTTATGCGCCTTCTTAGATAACCGGGGTC-TCAAACCCGACACCTGAA 6231 Query 20453 TTTGCCAGTGCCCGATT-ACTATGGCACA 20480 ||||| ||| | |||| ||||| || || Sbjct 6230 TTTGCAGGTG-CGGATTGACTATAGCGCA 6203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125008637739192