Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq32 120 3e-22 seq2 118 1e-21 seq116 107 2e-18 >seq32 Length=1919080 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||||||| | ||||| ||| || || |||||||| || |||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||||| || ||| | || || || |||||||| || || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | || || | | || | ||| || | || |||| Sbjct 39313 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 39371 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || ||||| |||||||| ||||||||||| Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq2 Length=5618958 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || || || | ||||||||||||||| ||||| || ||| Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || | |||||||| ||| | || ||||| || || || ||||| Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||||| ||||| | || | ||| |||| | ||| | Sbjct 3063991 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 3064050 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || |||||||| |||||||| ||||| Sbjct 3064051 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq116 Length=862150 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| ||| ||||| | || || |||||||| ||||||||||| | Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| ||||| || |||| |||||||||||||| ||||| Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||| ||||| |||||| ||||| Sbjct 483964 ATACCTTCCTTGTCCTGGATTTT-TGCTT 483937 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| ||| || || | || || |||||||| ||||||||||| | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| ||||| || |||| |||||||||||||| ||||| Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | | | || | ||| || | | || | Sbjct 484192 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||| | |||||| || || || ||||| Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||| | || ||||| | ||||| || || ||||||||||| ||| Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| | || | ||| ||||| || |||| ||||| || || || || || Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||||||| || ||| ||| | || | | | ||| | ||| |||| | ||| | Sbjct 481762 GACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || | || || ||||| |||||||| Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002616323840