Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq116 114 9e-21
seq340 113 3e-20
seq67 113 3e-20
seq2 102 5e-17
seq747 100 2e-16
seq32 100 2e-16
seq706 95.1 8e-15
>seq116
Length=862150
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
|||||||||||| |||||||| |||||||| || |||||||||||||| || |
Sbjct 484301 ACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 484242
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || ||||| || ||||| || | || || || || | || | ||||| ||
Sbjct 484241 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 484182
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|||| |||||| || || || | || ||| ||| ||| ||||| || || ||
Sbjct 484181 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGAT 484122
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||| ||||| || ||||| |||||
Sbjct 484121 CGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | |||||| || |||||||| || || || || ||||| ||||| || ||
Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | | || || ||||| || ||||| || | ||||||||||| | |||
Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
|| |||||||| || |||||| || ||||||| | ||| || |||||
Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || |||||||| || ||||| || |||||||| |||||||| ||
Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
||||| || || ||||| || | ||||| ||||| | ||| | ||||| || || |
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
||||| || ||||| | || |||||| ||||||||| || |||||||||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCT 38329
|| || || ||||| || || || ||||| ||||| || ||
Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAATCT 474093
Score = 82.4 bits (90), Expect = 5e-11
Identities = 122/172 (71%), Gaps = 1/172 (1%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||||||||||||||| | ||| |||||||| || |||||||
Sbjct 484088 CATT-CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT 484030
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
||||||| || | || || || ||||| || ||||| || | || || || || |
Sbjct 484029 CAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 483970
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC 38257
|| | ||||| |||||| |||||| || || || | || ||||||
Sbjct 483969 GAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918
>seq340
Length=248669
Score = 113 bits (124), Expect = 3e-20
Identities = 152/210 (72%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220
|||||| | | || || || |||||||| | || ||||| || |||||||||||
Sbjct 99610 GATGGGTTCGGTTAATGTGAACCGTAATGTTACCGATATTTTCTATCGTTACAAAATGCC 99669
Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278
||| | ||| ||||| ||||| ||||| || || || |||||||| || || || ||
Sbjct 99670 GCG--TTTGCAAGCCAAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAAT 99727
Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338
||| | ||||| || || | ||||| || ||||| || || || ||||| || ||
Sbjct 99728 ATGGCCGAAGTGGCACGAGCCATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGT 99787
Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGAT 6368
|| ||| | || ||||| || |||||||||
Sbjct 99788 TGTGAATTGGGTGCTCAAACTCAGTTTGAT 99817
Score = 89.7 bits (98), Expect = 3e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||||||| || || ||||| || || || || | || || | || || | |||||
Sbjct 99910 AACGAGCGTTTTATAGTTAATGGCTCCCACGACGCAGCTAAATTACAAGATCTCCTTGAT 99969
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| || || ||||| |||||| | |||| ||||||||||| ||||| || || ||||
Sbjct 99970 GGTTTCATACGCAAATTTGTGTTATGTCCTGAATGCGATAATCCGGAAACTGATCTTACA 100029
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551
|| || | |||| | || || || ||| || ||||| ||||||| ||||||
Sbjct 100030 GTTTCAGCTAAGAATCAAACTATATCGCAGTCTTGTAAAGCATGCGGTTTTCATGGC 100086
>seq67
Length=1297030
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
|||| ||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 1072327 TAAGTCCGTTCCCTTGGCTGTGGTTTCGTTAGATGGTAGATAGGGACAGAAAGAATCTCG 1072268
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
||||||| |||||||| ||||||||||||||||||
Sbjct 1072267 TTAATCCATTCATGCGTGTCACTAATTAGATGACG 1072233
>seq2
Length=5618958
Score = 102 bits (112), Expect = 5e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||||||||| || || || || || || || | || || ||||| || || || ||
Sbjct 3063907 CTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAA 3063966
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
||| | ||||||||||| | || | ||||||||| ||| |||||| ||| |||||
Sbjct 3063967 TATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 3064026
Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305
| | ||| || | |||||||| || ||||||||||| || || | ||||| ||
Sbjct 3064027 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 3064086
Query 38306 GAATATCTGCATGTTT 38321
||| || ||||| |||
Sbjct 3064087 GAAAATTTGCATTTTT 3064102
>seq747
Length=11701
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| ||||||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct 818 AAACCCGTTCCCTTGGGTGTGGTTTTGCTAGATAGTAAATAGGGACAGAAAGAATCTCGT 877
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||| || |||||||||||||||||||
Sbjct 878 TAATCCATTCACGCAAGTCACTAATTAGATGACGA 912
>seq32
Length=1919080
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| |||||||| ||| | ||| | ||| || ||||||||||| ||||| |||
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || ||||| ||||| || || || | ||||| || |||| ||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || ||||||||| ||| || || ||||| | || ||| || ||| ||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || ||||| | |||||| || || |||||||| ||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq706
Length=19342
Score = 95.1 bits (104), Expect = 8e-15
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 4460 CTCTCTGTTCAGAGTTCTCTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4401
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 4400 GGTTATATTTAG 4389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334940154176306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |