Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq116 114 9e-21 seq340 113 3e-20 seq67 113 3e-20 seq2 102 5e-17 seq747 100 2e-16 seq32 100 2e-16 seq706 95.1 8e-15 >seq116 Length=862150 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| |||||||| |||||||| || |||||||||||||| || | Sbjct 484301 ACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 484242 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || ||||| || ||||| || | || || || || | || | ||||| || Sbjct 484241 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 484182 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| |||||| || || || | || ||| ||| ||| ||||| || || || Sbjct 484181 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGAT 484122 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| ||||| || ||||| ||||| Sbjct 484121 CGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| || |||||||| || || || || ||||| ||||| || || Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | | || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 || |||||||| || |||||| || ||||||| | ||| || ||||| Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || |||||||| || ||||| || |||||||| |||||||| || Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| || || ||||| || | ||||| ||||| | ||| | ||||| || || | Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | || |||||| ||||||||| || ||||||||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCT 38329 || || || ||||| || || || ||||| ||||| || || Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAATCT 474093 Score = 82.4 bits (90), Expect = 5e-11 Identities = 122/172 (71%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||||||| | ||| |||||||| || ||||||| Sbjct 484088 CATT-CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT 484030 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| || | || || || ||||| || ||||| || | || || || || | Sbjct 484029 CAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 483970 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC 38257 || | ||||| |||||| |||||| || || || | || |||||| Sbjct 483969 GAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918 >seq340 Length=248669 Score = 113 bits (124), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 |||||| | | || || || |||||||| | || ||||| || ||||||||||| Sbjct 99610 GATGGGTTCGGTTAATGTGAACCGTAATGTTACCGATATTTTCTATCGTTACAAAATGCC 99669 Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278 ||| | ||| ||||| ||||| ||||| || || || |||||||| || || || || Sbjct 99670 GCG--TTTGCAAGCCAAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAAT 99727 Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338 ||| | ||||| || || | ||||| || ||||| || || || ||||| || || Sbjct 99728 ATGGCCGAAGTGGCACGAGCCATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGT 99787 Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGAT 6368 || ||| | || ||||| || ||||||||| Sbjct 99788 TGTGAATTGGGTGCTCAAACTCAGTTTGAT 99817 Score = 89.7 bits (98), Expect = 3e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| || || ||||| || || || || | || || | || || | ||||| Sbjct 99910 AACGAGCGTTTTATAGTTAATGGCTCCCACGACGCAGCTAAATTACAAGATCTCCTTGAT 99969 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||| |||||| | |||| ||||||||||| ||||| || || |||| Sbjct 99970 GGTTTCATACGCAAATTTGTGTTATGTCCTGAATGCGATAATCCGGAAACTGATCTTACA 100029 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 || || | |||| | || || || ||| || ||||| ||||||| |||||| Sbjct 100030 GTTTCAGCTAAGAATCAAACTATATCGCAGTCTTGTAAAGCATGCGGTTTTCATGGC 100086 >seq67 Length=1297030 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct 1072327 TAAGTCCGTTCCCTTGGCTGTGGTTTCGTTAGATGGTAGATAGGGACAGAAAGAATCTCG 1072268 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 ||||||| |||||||| |||||||||||||||||| Sbjct 1072267 TTAATCCATTCATGCGTGTCACTAATTAGATGACG 1072233 >seq2 Length=5618958 Score = 102 bits (112), Expect = 5e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||| || || || || || || || | || || ||||| || || || || Sbjct 3063907 CTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAA 3063966 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| | ||||||||||| | || | ||||||||| ||| |||||| ||| ||||| Sbjct 3063967 TATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 3064026 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| || | |||||||| || ||||||||||| || || | ||||| || Sbjct 3064027 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 3064086 Query 38306 GAATATCTGCATGTTT 38321 ||| || ||||| ||| Sbjct 3064087 GAAAATTTGCATTTTT 3064102 >seq747 Length=11701 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||| |||||||| ||||||||||| |||||| |||||||| Sbjct 818 AAACCCGTTCCCTTGGGTGTGGTTTTGCTAGATAGTAAATAGGGACAGAAAGAATCTCGT 877 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||| || ||||||||||||||||||| Sbjct 878 TAATCCATTCACGCAAGTCACTAATTAGATGACGA 912 >seq32 Length=1919080 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||| ||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| ||||| || || || | ||||| || |||| || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | || ||| || ||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | |||||| || || |||||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq706 Length=19342 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 4460 CTCTCTGTTCAGAGTTCTCTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4401 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4400 GGTTATATTTAG 4389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940154176306