Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq162 428 6e-115
seq512 275 8e-69
seq109 89.7 7e-13
>seq162
Length=626193
Score = 428 bits (474), Expect = 6e-115
Identities = 1352/2073 (65%), Gaps = 49/2073 (2%)
Strand=Plus/Minus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
|| || | ||| || || |||||| | ||| || ||||| | ||| || ||||| ||
Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960
||||||| |||| |||| || |||||||| ||| | || |||| |||||| ||
Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816
Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020
| |||| ||| || || | ||||| ||||| ||||| || ||||| | || |||||
Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756
Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080
|| || || | | ||| | ||||||||||| |||||||| | | || || |
Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696
Query 62081 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62137
|| || | | || | | || || || || || | || ||||| || || || ||
Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636
Query 62138 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62197
| ||||||||| | || || ||| || |||| | ||| |||| ||||| |
Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576
Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257
|| || ||||||| ||| | || |||| |||||| || || || || | |||||||
Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516
Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62317
|| || || | |||||||||||| || || || ||||| || || || | || |||
Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456
Query 62318 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGATCCGACG 62375
| | || || || | || | |||||| || | | ||||||||| ||||| | |
Sbjct 500455 CGCACTCCATAACTTTTAATGTCG-CTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398
Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62434
| ||| || ||| | ||||| | | || | ||| |||||
Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339
Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494
|| ||||| || | | | | || | ||||||||| | ||||| ||||||||||
Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279
Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGC-GCTTCCAGGCTATCAAATGGATAATT 62553
|| ||||| || || | ||||||| | | || || | ||| ||| | || |||
Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220
Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613
| | ||| | ||||| || |||||||| || || | ||| || || | ||| |
Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160
Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673
|||||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100
Query 62674 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT-- 62730
| || | ||||| | || || || |||||| |||||||| || | |||| |
Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041
Query 62731 -TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789
||||||||| ||||| |||| ||||| | ||| ||||| |||| || | ||| ||
Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981
Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849
||||| | || || || || | ||||| || || || || || | ||| |||||||
Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921
Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909
|||| || ||||| ||||| || ||||| ||| | ||||| || || || | || |
Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861
Query 62910 -ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968
| | ||| | || | | | | ||||| |||||| | ||||| || |||| |
Sbjct 499860 CACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGT---TTTGT-TCGCTTTGCC 499806
Query 62969 CT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024
|| ||| ||| | || |||| || || | |||||| ||| | || ||
Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746
Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084
||| |||| || |||||||| | ||||| | | ||| ||| |||| |||||| ||
Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686
Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144
| ||| || ||||| ||||| ||||| ||| | | | | |||||| ||||| ||
Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626
Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204
||||||||| | | || || | | |||||| | |||||| || || |||||||| ||
Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566
Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264
| | | || || ||||| || || || || | || | || || || | |
Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506
Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324
| ||||| |||| || ||| | ||| || | | || || || | | || ||
Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446
Query 63325 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384
|| || || | ||| |||||||||||| || ||| ||||| ||| || ||
Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386
Query 63385 TCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443
| | | || | ||||| || || || || || ||| ||| | || | | |
Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327
Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503
|| |||| ||| | || | || | ||| |||||| || || ||||| |||||||
Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267
Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563
| | || || | ||||| || || |||||||| | || || || | ||||
Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207
Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623
| || | ||||||||||||||||| ||||| || | || || || ||| ||| || |
Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147
Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63683
| || || || ||| ||| ||||||||||| |||||| | || || ||| || || |
Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087
Query 63684 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAAT 63741
| |||||||| | || || ||| | | || | | || || | |||| |||
Sbjct 499086 CACAAATAATAGCAGAATTCAGTCGACCAGCATGCTCTCTTACAACCTTGTAATGGAAAT 499027
Query 63742 ACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 63801
||| |||||||| || | || || |||| ||| | ||||| |
Sbjct 499026 --CTGATATAATAGGCGAAGG----GAATCTT---CATTGTGATA--TAAATAAGT---- 498982
Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861
||||||||| |||| ||| ||||||||||| || | ||||| || || || ||
Sbjct 498981 TATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGGAAGTTTGACACTGCAATACT--- 498925
Query 63862 GGCTAGAATGGCATAATCCGGATGTTGTGTAGT 63894
|| | ||| ||||| ||||| || | |||||
Sbjct 498924 -GCCAAAATAGCATAGTCCGGGTGATCGGTAGT 498893
>seq512
Length=181763
Score = 275 bits (304), Expect = 8e-69
Identities = 498/723 (69%), Gaps = 9/723 (1%)
Strand=Plus/Minus
Query 32476 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535
||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | |
Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785
Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595
|||| || || | | ||||| | || | || | ||| |||| |||||| || |
Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725
Query 32596 CGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 32652
| |||||||| || || | | ||| ||| ||||||| | | |||||||||||
Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
|||| || || || || ||||||| || || || | || | ||| || || |
Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772
| || | || ||||||| ||||| || || ||||||||||| || || || |||
Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548
Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--T 32830
||||||||| ||||| || || || || || || | | || ||| || || |
Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488
Query 32831 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889
| ||| |||||| | ||||||| || |||||||| || || | ||||||||||| |
Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428
Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949
|||||||||| ||||| | ||| || ||| | | |||||| || || | | ||
Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368
Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009
||||||||||||| || | ||||| ||||| |||||||| || || ||||| | ||| |
Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308
Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069
| || || || || ||| |||||||||| ||||||| ||||| || || || ||
Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248
Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129
|| |||||||| ||||| |||||| ||||||| |||| | ||| ||
Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188
Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189
||||||| | || |||||||| | || || ||||| | |||||||| || || || |
Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128
Query 33190 CCT 33192
|||
Sbjct 52127 CCT 52125
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249
||||||||||||| ||||| || ||| ||||||||||||||||||| ||||| | ||||
Sbjct 50888 CCTTTTTATACATCTTCCATATCTCAGGATATTGAATTGGAAAAATTACAAAGCGTTTTG 50829
Query 33250 GATTTTTTGCAAGGATTGGTTCCAT 33274
|||||| | ||| | ||| || ||
Sbjct 50828 GATTTTCTTTAAGCAATGGCTCTAT 50804
>seq109
Length=951561
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27515 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 27574
||||| || ||||| ||||| || || ||||| |||||||| || ||||| ||||||| |
Sbjct 940886 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTTGCACTTCCCAAATAAAAA 940945
Query 27575 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618
|| ||||||| | ||| ||||||||||| | ||||||||
Sbjct 940946 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 940989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633618329389600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |