Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq162 428 6e-115 seq512 275 8e-69 seq109 89.7 7e-13 >seq162 Length=626193 Score = 428 bits (474), Expect = 6e-115 Identities = 1352/2073 (65%), Gaps = 49/2073 (2%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || || | ||| || || |||||| | ||| || ||||| | ||| || ||||| || Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||||| |||| |||| || |||||||| ||| | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 | |||| ||| || || | ||||| ||||| ||||| || ||||| | || ||||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 || || || | | ||| | ||||||||||| |||||||| | | || || | Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 62081 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62137 || || | | || | | || || || || || | || ||||| || || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 62138 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62197 | ||||||||| | || || ||| || |||| | ||| |||| ||||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257 || || ||||||| ||| | || |||| |||||| || || || || | ||||||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62317 || || || | |||||||||||| || || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 62318 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGATCCGACG 62375 | | || || || | || | |||||| || | | ||||||||| ||||| | | Sbjct 500455 CGCACTCCATAACTTTTAATGTCG-CTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398 Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62434 | ||| || ||| | ||||| | | || | ||| ||||| Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || ||||| || | | | | || | ||||||||| | ||||| |||||||||| Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279 Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGC-GCTTCCAGGCTATCAAATGGATAATT 62553 || ||||| || || | ||||||| | | || || | ||| ||| | || ||| Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | | ||| | ||||| || |||||||| || || | ||| || || | ||| | Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 |||||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100 Query 62674 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT-- 62730 | || | ||||| | || || || |||||| |||||||| || | |||| | Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041 Query 62731 -TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 ||||||||| ||||| |||| ||||| | ||| ||||| |||| || | ||| || Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 ||||| | || || || || | ||||| || || || || || | ||| ||||||| Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 |||| || ||||| ||||| || ||||| ||| | ||||| || || || | || | Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861 Query 62910 -ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 | | ||| | || | | | | ||||| |||||| | ||||| || |||| | Sbjct 499860 CACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGT---TTTGT-TCGCTTTGCC 499806 Query 62969 CT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 || ||| ||| | || |||| || || | |||||| ||| | || || Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||| |||| || |||||||| | ||||| | | ||| ||| |||| |||||| || Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||| || ||||| ||||| ||||| ||| | | | | |||||| ||||| || Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||||| | | || || | | |||||| | |||||| || || |||||||| || Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | | || || ||||| || || || || | || | || || || | | Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 | ||||| |||| || ||| | ||| || | | || || || | | || || Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446 Query 63325 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 || || || | ||| |||||||||||| || ||| ||||| ||| || || Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386 Query 63385 TCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 | | | || | ||||| || || || || || ||| ||| | || | | | Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 || |||| ||| | || | || | ||| |||||| || || ||||| ||||||| Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563 | | || || | ||||| || || |||||||| | || || || | |||| Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | ||||||||||||||||| ||||| || | || || || ||| ||| || | Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63683 | || || || ||| ||| ||||||||||| |||||| | || || ||| || || | Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087 Query 63684 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAAT 63741 | |||||||| | || || ||| | | || | | || || | |||| ||| Sbjct 499086 CACAAATAATAGCAGAATTCAGTCGACCAGCATGCTCTCTTACAACCTTGTAATGGAAAT 499027 Query 63742 ACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 63801 ||| |||||||| || | || || |||| ||| | ||||| | Sbjct 499026 --CTGATATAATAGGCGAAGG----GAATCTT---CATTGTGATA--TAAATAAGT---- 498982 Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861 ||||||||| |||| ||| ||||||||||| || | ||||| || || || || Sbjct 498981 TATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGGAAGTTTGACACTGCAATACT--- 498925 Query 63862 GGCTAGAATGGCATAATCCGGATGTTGTGTAGT 63894 || | ||| ||||| ||||| || | ||||| Sbjct 498924 -GCCAAAATAGCATAGTCCGGGTGATCGGTAGT 498893 >seq512 Length=181763 Score = 275 bits (304), Expect = 8e-69 Identities = 498/723 (69%), Gaps = 9/723 (1%) Strand=Plus/Minus Query 32476 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 ||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||| || || | | ||||| | || | || | ||| |||| |||||| || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 32596 CGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 32652 | |||||||| || || | | ||| ||| ||||||| | | ||||||||||| Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| || || || || ||||||| || || || | || | ||| || || | Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--T 32830 ||||||||| ||||| || || || || || || | | || ||| || || | Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488 Query 32831 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||| |||||| | ||||||| || |||||||| || || | ||||||||||| | Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 |||||||||| ||||| | ||| || ||| | | |||||| || || | | || Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 ||||||||||||| || | ||||| ||||| |||||||| || || ||||| | ||| | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | || || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 || |||||||| ||||| |||||| ||||||| |||| | ||| || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||||||| | || |||||||| | || || ||||| | |||||||| || || || | Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128 Query 33190 CCT 33192 ||| Sbjct 52127 CCT 52125 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249 ||||||||||||| ||||| || ||| ||||||||||||||||||| ||||| | |||| Sbjct 50888 CCTTTTTATACATCTTCCATATCTCAGGATATTGAATTGGAAAAATTACAAAGCGTTTTG 50829 Query 33250 GATTTTTTGCAAGGATTGGTTCCAT 33274 |||||| | ||| | ||| || || Sbjct 50828 GATTTTCTTTAAGCAATGGCTCTAT 50804 >seq109 Length=951561 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27515 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 27574 ||||| || ||||| ||||| || || ||||| |||||||| || ||||| ||||||| | Sbjct 940886 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTTGCACTTCCCAAATAAAAA 940945 Query 27575 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 || ||||||| | ||| ||||||||||| | |||||||| Sbjct 940946 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 940989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618329389600