Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq116 154 1e-32 seq32 132 4e-26 >seq116 Length=862150 Score = 154 bits (170), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || ||||||||||| ||| | ||||| | ||||| || |||| Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 25058 TGACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||| | | | |||| ||||||| ||||| ||||| ||||| || |||| Sbjct 484145 AGACACTATCGAAAACGTTAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 484203 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| |||||||| || ||||||| ||||| || ||||||| Sbjct 484204 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 484263 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | || ||||| ||||| || || || || ||| Sbjct 484264 ACATACAAAAGGAATCTACTCTTCACTTGGTG 484295 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||||||||||||| ||||||| | || || || || || Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942 Query 25059 GACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||||| | | | |||| ||||||| ||||| ||||| ||||| || ||||| Sbjct 481943 GATACTATCGAAAACGTTAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 482001 Query 25118 ACAGCG 25123 ||||| Sbjct 482002 GCAGCG 482007 >seq32 Length=1919080 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 39419 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 39360 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| || | ||| |||||||| || |||||||| ||| Sbjct 39359 GACACTATCGAA--AATGTAAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGAC 39303 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| || || || ||||| ||||||| ||||| || |||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||||| ||||| | ||||| Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCT 39208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318884674690