Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq512 329 4e-85 seq38 123 3e-23 seq72 82.4 9e-11 >seq512 Length=181763 Score = 329 bits (364), Expect = 4e-85 Identities = 499/702 (71%), Gaps = 6/702 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTA 92984 ||| || ||| ||||||| || | | |||| || | ||||| || | ||| || | Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 52767 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | |||| || || ||||| || ||||| || ||| ||||| ||| | | || || | Sbjct 52766 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCA 52707 Query 93045 TTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | || | ||| | |||||||||| | || || ||||||| |||||| || Sbjct 52706 AAA-TCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCA 52648 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||||| ||||| || |||||||||| ||||| ||||||||||||||| | | | Sbjct 52647 CAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 52588 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||||||||| || || || || ||| ||| || |||||||| ||| Sbjct 52587 CCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACG 52528 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATCCATTTTAA 93282 || || || || | | |||||| ||||||| || |||| || | |||||| || Sbjct 52527 GCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGAT-ATCCATGCTAG 52469 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||| || || || ||||||| | || | ||| || ||||| |||||||| || || Sbjct 52468 AGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGATATTC 52409 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || || | | ||| || ||||| ||||| | | | ||||||||| || || || Sbjct 52408 ACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGCAC 52349 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| ||||| |||||||| || || || || || | |||||| || || || || ||||| Sbjct 52348 ATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTG 52289 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||||| || || | ||| ||||| || |||||||||||||| |||||||||||||| Sbjct 52288 GGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAA 52229 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | ||| |||||||| || | || | | | || ||||||| | ||||| Sbjct 52228 GACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTT 52169 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || || ||||| |||||||||| || ||||| || Sbjct 52168 AGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127 >seq38 Length=1709197 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1129596 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1129537 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1129536 GTGGGTTCGAACCCCACACCTGACA 1129512 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1165619 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1165678 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1165679 GTGGGTTCGAACCCCACACCTGACA 1165703 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1166619 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1166678 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1166679 TGGGTTCGAACCCCACACCTGACA 1166702 >seq72 Length=1601045 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 162752 CCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGATGCTCTAACCACTGA 162811 |||| |||||| || ||||||||||| || || || |||||| |||||| |||||||| Sbjct 1576906 CCTCCTGTGAGGATTGAACTCACGACCACTGGTTTACAAGACCAGTGCTCT-ACCACTGA 1576848 Query 162812 GCTAAAGAGGCTACA 162826 ||||||||||||||| Sbjct 1576847 GCTAAAGAGGCTACA 1576833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848785728240