Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq116 105 6e-18 seq32 105 6e-18 seq2 104 2e-17 >seq116 Length=862150 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| ||||||| ||||| || || ||||| ||||| Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | ||| |||||||| ||||||||| || || | ||||| || Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| |||||||| || || || ||||||||||| ||||| || Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 >seq32 Length=1919080 Score = 105 bits (116), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||| | | |||| || || || |||||||||||| || || |||||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111423 ||||| ||||||||||| || ||||| | ||| ||||| |||| ||||| | ||| || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG-AGCAAAAAA 39184 Query 111424 ACG 111426 ||| Sbjct 39183 ACG 39181 >seq2 Length=5618958 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 111176 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAA 111235 ||| | |||||||||||||||| || ||||| | || |||||||| ||||| ||||| Sbjct 3064109 AGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 3064050 Query 111236 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111295 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 3064049 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 3063990 Query 111296 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111355 | ||||||||| | | || | || ||||| |||||||||||| || | Sbjct 3063989 CTCCAGATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTAT 3063930 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||| ||||| |||||||| || || || | || || || | ||||| || ||||||| Sbjct 3063929 CCGACTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCA 3063870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423031101089200