Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq116 168 6e-37
seq32 154 1e-32
seq162 145 6e-30
seq2 125 6e-24
>seq116
Length=862150
Score = 168 bits (186), Expect = 6e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||||||||| ||||| |||||| ||||| | ||||| ||| | |
Sbjct 484086 ATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCA 484145
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | ||| |||||| || |||||||| |||||||| || || ||
Sbjct 484146 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 484205
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || ||||| ||||||||||| || ||| |||||| | || |||||||||
Sbjct 484206 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAAC 484265
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| ||||| || | || || || ||||| | |||||||||
Sbjct 484266 ATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGGT 484313
Score = 143 bits (158), Expect = 2e-29
Identities = 174/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268
|||| | || ||||| || || || || || || || || ||||| |||| | || ||
Sbjct 481645 ATTTTTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGT 481704
Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328
|| | |||| || | || || | ||| ||||||||||| || || || | ||
Sbjct 481705 TGAGCCATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCC 481764
Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388
||| |||||||||||| | || ||||| ||||||||||| || || |||||| ||||
Sbjct 481765 ACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTC 481824
Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||| ||||||||||| |||||||| || | ||||| ||||| || ||||| || ||
Sbjct 481825 CGACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361
|||||| || |||||||| |||||||| || || || || ||| | || ||||| |||||
Sbjct 483941 AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAA 484000
Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421
|||||| || ||| |||||| | || ||||||||||| ||||| |||||||| | ||
Sbjct 484001 ACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCCACATTGCA 484060
Query 22422 TTTAGTTTTGCGATTGCGCGGAGG 22445
||| || ||||| | ||||| ||
Sbjct 484061 TTTGGTGTTGCGTCTCCGCGGTGG 484084
Score = 113 bits (124), Expect = 4e-20
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260
||| | | |||| ||| |||||||| ||||| ||||| ||||| || ||||| | |||
Sbjct 474087 TTTGACAGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACT 474146
Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320
| ||||| ||| | | ||||| | || || | ||| ||||||||||| |||||
Sbjct 474147 TTGGAAGTTGAACCATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAA 474206
Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||||| || ||||| |||||| | || ||||| ||||| || ||
Sbjct 474207 GGTATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATT 474253
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||||||||| ||||||||||| ||||| | || || ||| | |
Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | ||| |||||| || |||||||| |||||||| || || ||
Sbjct 481943 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 482002
Query 22339 CAACGT 22344
|| |||
Sbjct 482003 CAGCGT 482008
>seq32
Length=1919080
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| |||||||| ||||| |||| || || || |||||||||| || ||| ||
Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || || | ||| || ||||| ||||| ||||| |||||||||||
Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||||| | || || || || || || || || ||| |||||| | ||||||||
Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| |||||||||||||||||| ||||| | || |||| ||||| || ||
Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193
>seq162
Length=626193
Score = 145 bits (160), Expect = 6e-30
Identities = 847/1330 (64%), Gaps = 46/1330 (3%)
Strand=Plus/Minus
Query 128911 ATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAA 128970
|| ||||||||||| ||||| || ||||| | |||||||| ||||||| ||
Sbjct 500803 ATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATGGTT 500744
Query 128971 TTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCT 129030
||||| |||||||| |||||||| || | ||| | | | || ||||| ||
Sbjct 500743 GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCAGGTATGGCT 500684
Query 129031 TCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTAC 129090
|| ||||| || | ||| | ||| | ||| |||| ||| | || || |
Sbjct 500683 TCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCCAA 500624
Query 129091 AAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCC 129150
| || || ||||||| | ||| | | || | ||| ||| ||||| | |
Sbjct 500623 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGAC 500564
Query 129151 AAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAAT 129210
| ||||| || || ||| || ||| | |||||||| || |||||||| || |
Sbjct 500563 AGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATTGTTACCAAGA 500504
Query 129211 ATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAGTTTCGCAAACCGT 129268
|||||||| || | ||| || ||||| ||| || |||| | | || |||| || |
Sbjct 500503 ATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGG--AATTGCGCACTCCAT 500446
Query 129269 GCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTGGGTGTGTGATT 129326
||||||||| |||| | | | ||| | ||| | ||| || || || | ||
Sbjct 500445 AACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATA--GATCAGTAGGCGTTTTATC 500388
Query 129327 CCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCAC 129386
||||| || ||||| | ||| | ||| | ||||| || | |||| |
Sbjct 500387 CCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTTCGTACGG 500328
Query 129387 GCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGC 129446
| ||| ||| |||||||| ||||| |||| || | || |||| ||||||||
Sbjct 500327 ACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTGTTTCAAA 500268
Query 129447 AATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAA 129506
||||| | || || || | |||||||| || || ||||| | |
Sbjct 500267 AATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTAAAATCAG 500208
Query 129507 TGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTT-T 129565
|| ||| || || ||||| | || | ||| || || ||||| ||| || ||| |
Sbjct 500207 TGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCT 500148
Query 129566 G--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCAC 129623
| | ||| |||| |||||||| ||||| || || |||||||| | ||||| |
Sbjct 500147 GGTTTCCGGCAAC---GGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTGTTAT 500091
Query 129624 AATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCG--ACA 129681
|| || | || | ||| | | | ||||| || | | ||| ||||| |||
Sbjct 500090 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTG---TTTATC--TGTCGTTACA 500036
Query 129682 AATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC-AC-TGT 129739
|| ||| | ||| || || |||||||| || || |||| || | | || | |
Sbjct 500035 AACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTC--TTCAGCCGACGTAT 499978
Query 129740 ACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTAC 129799
| ||||| ||||| | ||||| ||||| ||| || ||||| | || || ||||||||
Sbjct 499977 ATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTAC 499918
Query 129800 TTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG-TT 129858
|||| || |||||||||||||| | |||||| || || || || || ||||| |
Sbjct 499917 TTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCAC 499858
Query 129859 TCGACAATG-GTCCTGAACAAGTCTCGAGCCTTGATCTGTCTT-ACAAATTTGCCACATT 129916
| | | || | || || |||| ||||| || || ||| || |||||| |
Sbjct 499857 TGCATATTGCGAACT--ACTAGTCACGAGCTTTTAT-TGTTTTGTTCGCTTTGCCCTCGT 499801
Query 129917 TCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT----CGAGCAAC 129972
|| ||| || || | | ||||||| || | | | | | ||| |
Sbjct 499800 CTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAA---TTTCACACAAGCCAG 499744
Query 129973 GGCGATTCACGCGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAA 130031
||| ||| | | |||||||| | | ||| || | |||| || || |||| |||||| ||
Sbjct 499743 GGC-ATTTATGGGGACACATTAGAGACCA-ATGCTCATCAGCCTCAACTCTTTTCATGAA 499686
Query 130032 CAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGC-TTTTCTATCCTCGGCACCCA 130090
||||||||| | |||||| || || || ||||| || || ||| ||||| |||
Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCT-TCCTCCTTTCCCG 499627
Query 130091 TGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTG 130150
| || ||||| | || || ||| |||| || || ||||| || || | || || |
Sbjct 499626 TATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAG 499567
Query 130151 CCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGA 130207
| | || ||| ||||| || |||||||| || | || | |||||||| | |
Sbjct 499566 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 499507
Query 130208 CTCGCAACAT 130217
|| |||||
Sbjct 499506 GACGTAACAT 499497
>seq2
Length=5618958
Score = 125 bits (138), Expect = 6e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|||| ||||||||||| ||||||||| | || || ||||| | ||| | ||||| ||
Sbjct 3064103 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 3064044
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| |||| || | || || |||| |||||||| || || || || ||||| || |
Sbjct 3064043 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 3063984
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
||||||||||| | ||||| || ||||| || || || ||| ||||| | ||||| |
Sbjct 3063983 ATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACT 3063924
Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427
| ||||| ||||| || || ||| | || || ||
Sbjct 3063923 ATAACATACAAAAGGAGTCGACCTTGCACTTGGT 3063890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419719170759190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |