Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq116 168 6e-37 seq32 154 1e-32 seq162 145 6e-30 seq2 125 6e-24 >seq116 Length=862150 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||||| ||||| |||||| ||||| | ||||| ||| | | Sbjct 484086 ATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCA 484145 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| |||||| || |||||||| |||||||| || || || Sbjct 484146 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 484205 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| || ||| |||||| | || ||||||||| Sbjct 484206 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAAC 484265 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || || || ||||| | ||||||||| Sbjct 484266 ATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGGT 484313 Score = 143 bits (158), Expect = 2e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 |||| | || ||||| || || || || || || || || ||||| |||| | || || Sbjct 481645 ATTTTTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGT 481704 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 || | |||| || | || || | ||| ||||||||||| || || || | || Sbjct 481705 TGAGCCATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCC 481764 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 ||| |||||||||||| | || ||||| ||||||||||| || || |||||| |||| Sbjct 481765 ACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTC 481824 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||||||||| |||||||| || | ||||| ||||| || ||||| || || Sbjct 481825 CGACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 |||||| || |||||||| |||||||| || || || || ||| | || ||||| ||||| Sbjct 483941 AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAA 484000 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 |||||| || ||| |||||| | || ||||||||||| ||||| |||||||| | || Sbjct 484001 ACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCCACATTGCA 484060 Query 22422 TTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || ||||| | ||||| || Sbjct 484061 TTTGGTGTTGCGTCTCCGCGGTGG 484084 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 ||| | | |||| ||| |||||||| ||||| ||||| ||||| || ||||| | ||| Sbjct 474087 TTTGACAGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACT 474146 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 | ||||| ||| | | ||||| | || || | ||| ||||||||||| ||||| Sbjct 474147 TTGGAAGTTGAACCATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAA 474206 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||||| || ||||| |||||| | || ||||| ||||| || || Sbjct 474207 GGTATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATT 474253 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||||| ||||||||||| ||||| | || || ||| | | Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||| || |||||||| |||||||| || || || Sbjct 481943 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 482002 Query 22339 CAACGT 22344 || ||| Sbjct 482003 CAGCGT 482008 >seq32 Length=1919080 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| |||| || || || |||||||||| || ||| || Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || ||||| ||||| ||||| ||||||||||| Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||| | || || || || || || || || ||| |||||| | |||||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||||||||||| ||||| | || |||| ||||| || || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq162 Length=626193 Score = 145 bits (160), Expect = 6e-30 Identities = 847/1330 (64%), Gaps = 46/1330 (3%) Strand=Plus/Minus Query 128911 ATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAA 128970 || ||||||||||| ||||| || ||||| | |||||||| ||||||| || Sbjct 500803 ATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATGGTT 500744 Query 128971 TTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCT 129030 ||||| |||||||| |||||||| || | ||| | | | || ||||| || Sbjct 500743 GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCAGGTATGGCT 500684 Query 129031 TCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTAC 129090 || ||||| || | ||| | ||| | ||| |||| ||| | || || | Sbjct 500683 TCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCCAA 500624 Query 129091 AAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCC 129150 | || || ||||||| | ||| | | || | ||| ||| ||||| | | Sbjct 500623 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGAC 500564 Query 129151 AAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAAT 129210 | ||||| || || ||| || ||| | |||||||| || |||||||| || | Sbjct 500563 AGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATTGTTACCAAGA 500504 Query 129211 ATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAGTTTCGCAAACCGT 129268 |||||||| || | ||| || ||||| ||| || |||| | | || |||| || | Sbjct 500503 ATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGG--AATTGCGCACTCCAT 500446 Query 129269 GCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTGGGTGTGTGATT 129326 ||||||||| |||| | | | ||| | ||| | ||| || || || | || Sbjct 500445 AACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATA--GATCAGTAGGCGTTTTATC 500388 Query 129327 CCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCAC 129386 ||||| || ||||| | ||| | ||| | ||||| || | |||| | Sbjct 500387 CCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTTCGTACGG 500328 Query 129387 GCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGC 129446 | ||| ||| |||||||| ||||| |||| || | || |||| |||||||| Sbjct 500327 ACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTGTTTCAAA 500268 Query 129447 AATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAA 129506 ||||| | || || || | |||||||| || || ||||| | | Sbjct 500267 AATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTAAAATCAG 500208 Query 129507 TGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTT-T 129565 || ||| || || ||||| | || | ||| || || ||||| ||| || ||| | Sbjct 500207 TGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCT 500148 Query 129566 G--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCAC 129623 | | ||| |||| |||||||| ||||| || || |||||||| | ||||| | Sbjct 500147 GGTTTCCGGCAAC---GGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTGTTAT 500091 Query 129624 AATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCG--ACA 129681 || || | || | ||| | | | ||||| || | | ||| ||||| ||| Sbjct 500090 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTG---TTTATC--TGTCGTTACA 500036 Query 129682 AATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC-AC-TGT 129739 || ||| | ||| || || |||||||| || || |||| || | | || | | Sbjct 500035 AACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTC--TTCAGCCGACGTAT 499978 Query 129740 ACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTAC 129799 | ||||| ||||| | ||||| ||||| ||| || ||||| | || || |||||||| Sbjct 499977 ATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTAC 499918 Query 129800 TTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG-TT 129858 |||| || |||||||||||||| | |||||| || || || || || ||||| | Sbjct 499917 TTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCAC 499858 Query 129859 TCGACAATG-GTCCTGAACAAGTCTCGAGCCTTGATCTGTCTT-ACAAATTTGCCACATT 129916 | | | || | || || |||| ||||| || || ||| || |||||| | Sbjct 499857 TGCATATTGCGAACT--ACTAGTCACGAGCTTTTAT-TGTTTTGTTCGCTTTGCCCTCGT 499801 Query 129917 TCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT----CGAGCAAC 129972 || ||| || || | | ||||||| || | | | | | ||| | Sbjct 499800 CTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAA---TTTCACACAAGCCAG 499744 Query 129973 GGCGATTCACGCGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAA 130031 ||| ||| | | |||||||| | | ||| || | |||| || || |||| |||||| || Sbjct 499743 GGC-ATTTATGGGGACACATTAGAGACCA-ATGCTCATCAGCCTCAACTCTTTTCATGAA 499686 Query 130032 CAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGC-TTTTCTATCCTCGGCACCCA 130090 ||||||||| | |||||| || || || ||||| || || ||| ||||| ||| Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCT-TCCTCCTTTCCCG 499627 Query 130091 TGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTG 130150 | || ||||| | || || ||| |||| || || ||||| || || | || || | Sbjct 499626 TATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAG 499567 Query 130151 CCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGA 130207 | | || ||| ||||| || |||||||| || | || | |||||||| | | Sbjct 499566 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 499507 Query 130208 CTCGCAACAT 130217 || ||||| Sbjct 499506 GACGTAACAT 499497 >seq2 Length=5618958 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||||||||| ||||||||| | || || ||||| | ||| | ||||| || Sbjct 3064103 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 3064044 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| || | || || |||| |||||||| || || || || ||||| || | Sbjct 3064043 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 3063984 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||||||||| | ||||| || ||||| || || || ||| ||||| | ||||| | Sbjct 3063983 ATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACT 3063924 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | ||||| ||||| || || ||| | || || || Sbjct 3063923 ATAACATACAAAAGGAGTCGACCTTGCACTTGGT 3063890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719170759190