Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq102 96.9 7e-15
seq191 91.5 3e-13
seq57 91.5 3e-13
seq52 91.5 3e-13
seq24 91.5 3e-13
seq45 87.8 4e-12
>seq102
Length=995313
Score = 96.9 bits (106), Expect = 7e-15
Identities = 70/80 (88%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 688693 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 688634
Query 142564 CCCACATCGGGCAGAAGTCG 142583
||||| | |||| |||||||
Sbjct 688633 CCCACGTTGGGC-GAAGTCG 688615
>seq191
Length=558087
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 533181 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 533122
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 533121 CCCACGTTGGGCGCAAGT 533104
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 441398 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 441457
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 441458 CCCACGTTGGGC 441469
>seq57
Length=1431201
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 624870 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 624811
Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595
||||| | |||| ||| | | |||||| ||
Sbjct 624810 CCCACGTTGGGC--GAGTGGGCTTCTTTTTAT 624781
>seq52
Length=1542500
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1428611 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1428552
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 1428551 CCCCACGTTGGGC 1428539
>seq24
Length=2112931
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110
||||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1100940 ATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGA 1100881
Query 142111 CCCCCGCCAGAGA 142123
|||||| || ||
Sbjct 1100880 TCCCCGCAAGGGA 1100868
Score = 91.5 bits (100), Expect = 3e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1104126 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 1104067
Query 142112 CCCCGCCAGAGACG-CCAGG 142130
|||||| || || | |||||
Sbjct 1104066 CCCCGCAAGGGATGTCCAGG 1104047
>seq45
Length=1622812
Score = 87.8 bits (96), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 1507864 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 1507923
Query 142113 CCCGCCAGAGA 142123
||||| || ||
Sbjct 1507924 CCCGCAAGGGA 1507934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027814070031566
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |