Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq116 172 1e-37 seq32 156 8e-33 seq2 156 8e-33 >seq116 Length=862150 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || ||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| ||||| || || || || || | | || ||||| || ||| Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || || ||||| || ||| ||||| ||||||| | ||||||| Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||| |||||||| || | || || || ||||| |||||| Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || ||||| || || || || ||||| || ||||| || ||||||||||| | ||| Sbjct 481869 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 481810 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 | ||| ||||| || || || || || | | |||||| || ||||| | ||||| || Sbjct 481809 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTA 481750 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || | || || ||| || ||||| | || || || ||||||||||| Sbjct 481749 TCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATA 481690 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || | ||||| ||||| ||||||||| Sbjct 481689 GTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATT 481654 Score = 125 bits (138), Expect = 1e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| || ||||| ||||| || | ||||| || ||||| ||||| ||||| | Sbjct 484086 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG 484027 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | ||| | |||||||| ||||| || || || || || | | || ||||| || | Sbjct 484026 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 483967 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || || ||||| || ||| ||||| || || | |||||| | Sbjct 483966 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAA 483907 Query 68413 CTTCCAA 68419 | ||||| Sbjct 483906 CCTCCAA 483900 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || ||||| ||||||||||| || || ||||| || ||| ||||| || Sbjct 482004 TGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTA 481945 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| ||||||||| ||||| ||||||||||| || || | || || || ||||| ||| Sbjct 481944 TCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTGC 481885 Query 68460 AT 68461 || Sbjct 481884 AT 481883 >seq32 Length=1919080 Score = 156 bits (172), Expect = 8e-33 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| |||| ||||| |||||||| || ||||||||||| | ||| | |||||||| | Sbjct 39212 CAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCA 39271 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || ||||| || | || ||| |||||||||||||| || || ||||| |||| Sbjct 39272 ATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAA 39331 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| || || || ||||| ||||| | | ||| || || | |||||||| || | Sbjct 39332 TCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGC 39391 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || |||||||| Sbjct 39392 CCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq2 Length=5618958 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| | || ||||| ||||| |||||||| ||||| Sbjct 3063872 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGAT 3063931 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| || ||||| || |||||||| | | |||||| || || ||| Sbjct 3063932 AACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGA 3063991 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || ||||| || |||||||| || || ||||| | | || ||| Sbjct 3063992 ATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 3064051 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATT 68470 ||||| || || ||||| || || || || || ||||| || |||||| | |||| Sbjct 3064052 TCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 3064107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921602515996720