Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq116 109 4e-19 seq21 86.0 4e-12 >seq116 Length=862150 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| ||||||| || || || ||||| || || ||||| ||| | | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | |||| |||||| || || || ||| | ||| | |||| Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| | |||||| || || | |||||||| Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||||||||| |||| || ||| | || ||||| Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || ||||| || || ||||| || ||| |||| || | Sbjct 481652 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 481711 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || |||| |||||| |||||||| || || || | | Sbjct 481712 TCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 481771 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||||||||||||||| | ||| || || | |||| ||| Sbjct 481772 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 481831 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||| || || ||| |||| |||||||| || || || Sbjct 481832 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881 >seq21 Length=2241434 Score = 86.0 bits (94), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 20068 TTACCTCGGGGTTTGCACGGGTTCCATGTCCACGAATACGGCGACATGAGCAACGGCTGC 20127 ||| || ||| || || || || ||||| ||||||| ||| |||| | ||||||||| Sbjct 1381686 TTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGC 1381745 Query 20128 ACGTCGGCCGGCGAGCATTTTAATCCCACCGACGAAGACCATGGCGCTCCC---GATGCC 20184 || || ||||| | |||||||||||| | | |||| ||||| || ||| |||| Sbjct 1381746 ACTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCATGGAGCACCCACTGATGAT 1381805 Query 20185 GAAATTAGGCATGTCGGTGATTTAGGCAA 20213 ||| | ||| |||||||||| ||||| Sbjct 1381806 GAA---CGTCATATCGGTGATTTGGGCAA 1381831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358117266621004