Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq116 129 1e-24
seq2 129 1e-24
>seq116
Length=862150
Score = 129 bits (142), Expect = 1e-24
Identities = 147/196 (75%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || || || | | ||||| || ||||| || ||||| || || ||
Sbjct 484277 TTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 484218
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| |||||| || ||||| || ||||| || ||||||||||| ||||| ||
Sbjct 484217 GATCAAACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAAC 484161
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| |||| || || ||||||||| | |||||||| || ||||||| ||| ||
Sbjct 484160 GTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 484101
Query 288459 GACGAATATCTGCATT 288474
|| ||||| ||||||
Sbjct 484100 AACAAATATTTGCATT 484085
Score = 127 bits (140), Expect = 5e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || || ||||||| ||| ||||| || | ||| || ||||| || || ||
Sbjct 481846 TTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAA 481787
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| |||||| ||||| |||||||||||| || ||||| | ||| || ||
Sbjct 481786 GATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATT 481727
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| ||| | || || || | ||||| || ||||| |||| ||||| ||
Sbjct 481726 CTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCAC 481667
Query 288462 GAATATCTGCATT 288474
||| |||||||||
Sbjct 481666 GAAGATCTGCATT 481654
Score = 98.7 bits (108), Expect = 2e-15
Identities = 125/171 (73%), Gaps = 6/171 (4%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||||||||| | | || | ||| | ||| ||| ||||| || || || || |
Sbjct 484085 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGA 484026
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| ||||| || ||||| || ||||| || || ||||||| |||||| || |||||
Sbjct 484025 CAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGG 483969
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413
|| ||||| || ||||||||||| ||||| |||||||| |||| |||
Sbjct 483968 AGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| || ||||||||||| ||||| |||||||| |||| ||| ||||||
Sbjct 481992 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCTGATGATTCT 481933
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| || || ||||||| ||| || || ||||| |||||
Sbjct 481932 ACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTGCAT 481883
>seq2
Length=5618958
Score = 129 bits (142), Expect = 1e-24
Identities = 174/241 (72%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||||| | || | || || ||||| || ||||||||||
Sbjct 3063872 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGAT 3063931
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||||| || ||||| ||||| || || ||||| |||| ||| |||||| |||||
Sbjct 3063932 AACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGA---TCTGGA 3063988
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||||||||| ||||| || || || ||||| |||| ||| | ||
Sbjct 3063989 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 3064048
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483
||||| | || || || || || || ||||| || ||||| || |||||| | |||||
Sbjct 3064049 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTC 3064108
Query 288484 T 288484
|
Sbjct 3064109 T 3064109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179628312680228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |