Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq116 129 1e-24 seq2 129 1e-24 >seq116 Length=862150 Score = 129 bits (142), Expect = 1e-24 Identities = 147/196 (75%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || || || | | ||||| || ||||| || ||||| || || || Sbjct 484277 TTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 484218 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| |||||| || ||||| || ||||| || ||||||||||| ||||| || Sbjct 484217 GATCAAACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAAC 484161 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || || ||||||||| | |||||||| || ||||||| ||| || Sbjct 484160 GTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 484101 Query 288459 GACGAATATCTGCATT 288474 || ||||| |||||| Sbjct 484100 AACAAATATTTGCATT 484085 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||||| ||| ||||| || | ||| || ||||| || || || Sbjct 481846 TTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAA 481787 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| ||||| |||||||||||| || ||||| | ||| || || Sbjct 481786 GATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATT 481727 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | || || || | ||||| || ||||| |||| ||||| || Sbjct 481726 CTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCAC 481667 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 481666 GAAGATCTGCATT 481654 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | || | ||| | ||| ||| ||||| || || || || | Sbjct 484085 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGA 484026 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| || ||||| || || ||||||| |||||| || ||||| Sbjct 484025 CAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGG 483969 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 || ||||| || ||||||||||| ||||| |||||||| |||| ||| Sbjct 483968 AGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || ||||||||||| ||||| |||||||| |||| ||| |||||| Sbjct 481992 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCTGATGATTCT 481933 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || ||||||| ||| || || ||||| ||||| Sbjct 481932 ACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTGCAT 481883 >seq2 Length=5618958 Score = 129 bits (142), Expect = 1e-24 Identities = 174/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | || || ||||| || |||||||||| Sbjct 3063872 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGAT 3063931 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || ||||| ||||| || || ||||| |||| ||| |||||| ||||| Sbjct 3063932 AACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGA---TCTGGA 3063988 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||| || || || ||||| |||| ||| | || Sbjct 3063989 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 3064048 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| | || || || || || || ||||| || ||||| || |||||| | ||||| Sbjct 3064049 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTC 3064108 Query 288484 T 288484 | Sbjct 3064109 T 3064109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628312680228