Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq32 118 1e-21 seq116 114 1e-20 seq162 105 7e-18 seq2 102 8e-17 seq21 93.3 4e-14 >seq32 Length=1919080 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| ||||| | || |||||||||||||| || ||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||||| || || |||| | || ||||||||||| ||| Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || || || |||||| || | || || || || || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| || | |||||||| ||||| ||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | ||||| | ||||| | ||| Sbjct 484288 TGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGT 484229 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | ||||||||||| |||||||| ||||| || || || | |||| Sbjct 484228 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA-TTTT 484170 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| || || | || || | || ||||| | ||| | || || ||||| Sbjct 484169 TGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGT 484110 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 ||||||||| || || ||||||||| Sbjct 484109 CAAAGTTTTAACAAATATTTGCATT 484085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| ||||| ||||||||||| | | ||||| | ||||| Sbjct 484067 CACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTC 484008 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||| ||||| ||| | || | ||||||||||| |||||||| ||||| || || || Sbjct 484007 CAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 483948 Query 64354 TATTTTTTGCTTTA 64367 | ||||||||||| Sbjct 483947 GA-TTTTTGCTTTA 483935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| ||||||||||| || | || ||||| | | ||| | ||| ||||| Sbjct 481851 GTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCA 481792 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || || | ||||||||| ||||| ||||| || Sbjct 481791 GCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTA 481732 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || || || | || | || || || ||||| || Sbjct 481731 ACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTC 481672 Query 64427 TTTACGAAAATTTGCATTTTAATAA 64451 || ||||| || |||||||||| || Sbjct 481671 TTCACGAAGATCTGCATTTTAAAAA 481647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| |||| | || ||||| || || ||||| ||||| || ||||| ||| Sbjct 474250 TGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATT 474191 Query 64358 TTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 || |||||| || || | ||||| | || ||||| | ||| | || ||||| Sbjct 474190 TTA-GCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || |||||||| || ||||||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102 >seq162 Length=626193 Score = 105 bits (116), Expect = 7e-18 Identities = 538/847 (64%), Gaps = 32/847 (4%) Strand=Plus/Minus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 ||| || || ||||| || | || || || || || |||| | |||||||| || Sbjct 500936 TTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACC 500877 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 |||||| || || ||||||| | | || | || |||| | |||| || Sbjct 500876 GGTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGG 500817 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 || |||| | | |||||| || ||||| || ||||| ||||| |||||||| | || Sbjct 500816 TTGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGC 500757 Query 153851 CATGTCAATCAAGTT---TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907 ||||| || ||| || || | |||||||| || ||||| || | |||| || Sbjct 500756 CATGTTGATG--GTTGACTTCACCGAA-ATTTCCCAAACCGTTTTATACAATTCTTTTAT 500700 Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCG----GCCGCTATAATGGAAT 153963 | || |||||| || || || || | ||| ||| ||| ||| | | | Sbjct 500699 GCTTTCAGGTATGGCTTCGATGTTTTGTATTGAGCC-CCGATGTGCCAATATTAAGTTTT 500641 Query 153964 TGCGCATGTGGTCGTCGTACA-----AATTTAGTCGACATAAATCTTCAACCAAGTGCTG 154018 | ||||| || | | | |||| |||| ||||||| || ||| || || Sbjct 500640 T---CATGTTATCATTCCAAAGGCCCAATTCAGTC-----AAATCTTTAAGCAAATGATG 500589 Query 154019 GTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGG 154078 || | ||| ||| || || | || |||||| || | | ||| ||| | || Sbjct 500588 ATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGG 500529 Query 154079 CTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCAC 154138 ||| || || || ||||| || | |||||||| |||| || || ||||| || || Sbjct 500528 CTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTAC 500469 Query 154139 CAACAAAGAGTTTCGCAAACCGTGTTTTGCAATG-CGCAATTTTAA-ATCTGCCCAATTC 154196 | ||| || || |||| || | || |||| ||| |||||| ||| | ||||||| Sbjct 500468 TAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGC--TTTTAAGATCCGACCAATTC 500411 Query 154197 CACAAGTTGGTAGG--TTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCG 154254 || | | ||||| || | | |||||| || ||||| | | | | ||| | | Sbjct 500410 CATAGATCAGTAGGCGTTTTA--TCCCACATATCATATTGAAGGATAGCTTTACTAACTG 500353 Query 154255 GACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTA 154314 |||| | ||| | |||||| | || |||| ||||| || ||||| |||||| Sbjct 500352 GACTACCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTA 500293 Query 154315 ACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTT 154374 | | | || |||| ||||| ||||||||| ||||| || || || |||| Sbjct 500292 AGTCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTT 500233 Query 154375 CGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGG 154434 | || || | | || || | | || || || | ||||| | ||| | |||| | Sbjct 500232 CATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTG 500173 Query 154435 GTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAA 154494 | | || ||||| || | | ||| || || ||||| |||||||||||||| | Sbjct 500172 GACGATGACGAAAATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTA 500113 Query 154495 TTTTATT 154501 |||| || Sbjct 500112 TTTTGTT 500106 >seq2 Length=5618958 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||| || || | | |||||| | ||||| | |||||||| Sbjct 3063902 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCA 3063961 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || || || || |||||||| |||||||| || || ||||| ||| Sbjct 3063962 GCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 3064021 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| | ||| | || ||||| || | |||| Sbjct 3064022 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 3064081 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || ||||||||||||||||| ||| Sbjct 3064082 TTAACGAAAATTTGCATTTTTATA 3064105 >seq21 Length=2241434 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||| | || ||||||||||||||||||||||| |||| || ||||||||||| || ||| Sbjct 1381695 GGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCACTTCTGCC 1381754 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || | |||||| || || | || |||| || || ||||| | | | || || Sbjct 1381755 GGTGCGCATTTTAATCCTTGCAATAAAGAGCATGGAGCACCCACTGATGATGAACGTCAT 1381814 Query 115481 GTCGGTGATCTGGGCAACGTCGAATC 115506 |||||||| ||||||| || || || Sbjct 1381815 ATCGGTGATTTGGGCAATGTTGAGTC 1381840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634020163440