Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq162 96.9 3e-15 seq116 95.1 1e-14 seq2 86.0 6e-12 seq32 84.2 2e-11 >seq162 Length=626193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 602/954 (63%), Gaps = 29/954 (3%) Strand=Plus/Minus Query 152817 TTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGT 152876 ||||| |||||||| || || || ||||| || || | ||||| | || | Sbjct 500800 TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATGGTTGAC 500741 Query 152877 TTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCA 152936 || || || ||||| | ||||| ||||| | ||| | ||| || ||||| |||| Sbjct 500740 TTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCAGGTATGGCTTCG 500681 Query 152937 ATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT--AGCGTTTCGTATT-TCGGGCGTGTAC 152993 ||||| || || |||||| ||||| || || || |||| | || || | | Sbjct 500680 ATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCC---AA 500624 Query 152994 ACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCC 153053 | | || || | | | || | | ||| | || ||||| || |||||| || | | Sbjct 500623 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGAC 500564 Query 153054 AACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGT 153113 | || |||| | | ||| |||| | || ||||| || || || || || || Sbjct 500563 AGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATTGTTACCAAGA 500504 Query 153114 ATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC 153173 |||||||| || | || || ||||| || || | ||| ||||| |||| || | Sbjct 500503 ATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTGCGCACTCCATAA 500444 Query 153174 GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCAC 153233 | ||||||| || | || ||||| ||| || | | || || | |||| Sbjct 500443 CTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGCGTTTTATCCCAC 500384 Query 153234 ATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG 153293 || || || || | | || ||| | ||||| || || | || ||| | | Sbjct 500383 ATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTTCGTACGGACTG 500324 Query 153294 TCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATT 153353 | ||| ||||| ||| || ||| | || | | || || ||||| ||||| ||| Sbjct 500323 TATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTGTTTCAAAAATT 500264 Query 153354 TGTTTATTGAGAACG-GCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGC 153412 |||||||| | | || || || | |||||| || || || |||| | | | || Sbjct 500263 TGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTAAAATCAGTGC 500205 Query 153413 GTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGC------TTCTCGTTGCTGCG 153466 ||| || | || |||| || | || || || ||||| || || ||| | Sbjct 500204 GTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTG-G 500146 Query 153467 CCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCAC 153526 || || | ||||||| |||| |||||| |||||||||||||| | Sbjct 500145 TTTCCGGC-----AACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTGTTAT 500091 Query 153527 CACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA--GGTCATTTCGTCGACGCGTACG 153584 | || | | | || ||||| | |||||||| | | || | |||| | || Sbjct 500090 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCT-GTCGTTACAAAC- 500033 Query 153585 CATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-GTCGCTGTA 153643 || ||||| ||||| || || | ||| || || || | ||||| || | || | || Sbjct 500032 -AT--ATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG-TATA 499977 Query 153644 CTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT 153703 | ||||| || | || | ||| ||||||||||| ||| | ||| || ||||| || Sbjct 499976 TTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACT 499917 Query 153704 TTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 ||||||||| || || |||||| | |||||||| || |||||||| ||||| Sbjct 499916 TTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTG 499863 >seq116 Length=862150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| ||||| ||||| | | || || || ||||||||||||||| Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || | || | ||||| || | | |||| | ||| ||||| || || || Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||| || ||| |||| ||||||| | || | ||||||| | ||| | Sbjct 481762 GACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||||| || || || || |||||||| Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 >seq2 Length=5618958 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | ||||||||||| ||||| |||||| Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || | ||| || || | | || | ||| ||||| || ||||| Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| |||| | || | | ||| | ||||||| | ||| | Sbjct 3063991 AATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 3064049 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||| |||||||| || ||||| ||||| Sbjct 3064050 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq32 Length=1919080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||||| || | ||||| | | || || |||||||| || || ||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || || | | || | || || ||||| || || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | ||||| | ||| | ||||| | | || || Sbjct 39313 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 39371 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || |||||||||||||||||||| Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251693138720