Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq162 96.9 3e-15
seq116 95.1 1e-14
seq2 86.0 6e-12
seq32 84.2 2e-11
>seq162
Length=626193
Score = 96.9 bits (106), Expect = 3e-15
Identities = 602/954 (63%), Gaps = 29/954 (3%)
Strand=Plus/Minus
Query 152817 TTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGT 152876
||||| |||||||| || || || ||||| || || | ||||| | || |
Sbjct 500800 TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATGGTTGAC 500741
Query 152877 TTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCA 152936
|| || || ||||| | ||||| ||||| | ||| | ||| || ||||| ||||
Sbjct 500740 TTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCAGGTATGGCTTCG 500681
Query 152937 ATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT--AGCGTTTCGTATT-TCGGGCGTGTAC 152993
||||| || || |||||| ||||| || || || |||| | || || | |
Sbjct 500680 ATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCC---AA 500624
Query 152994 ACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCC 153053
| | || || | | | || | | ||| | || ||||| || |||||| || | |
Sbjct 500623 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGAC 500564
Query 153054 AACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGT 153113
| || |||| | | ||| |||| | || ||||| || || || || || ||
Sbjct 500563 AGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATTGTTACCAAGA 500504
Query 153114 ATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC 153173
|||||||| || | || || ||||| || || | ||| ||||| |||| || |
Sbjct 500503 ATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTGCGCACTCCATAA 500444
Query 153174 GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCAC 153233
| ||||||| || | || ||||| ||| || | | || || | ||||
Sbjct 500443 CTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGCGTTTTATCCCAC 500384
Query 153234 ATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG 153293
|| || || || | | || ||| | ||||| || || | || ||| | |
Sbjct 500383 ATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTTCGTACGGACTG 500324
Query 153294 TCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATT 153353
| ||| ||||| ||| || ||| | || | | || || ||||| ||||| |||
Sbjct 500323 TATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTGTTTCAAAAATT 500264
Query 153354 TGTTTATTGAGAACG-GCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGC 153412
|||||||| | | || || || | |||||| || || || |||| | | | ||
Sbjct 500263 TGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTAAAATCAGTGC 500205
Query 153413 GTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGC------TTCTCGTTGCTGCG 153466
||| || | || |||| || | || || || ||||| || || ||| |
Sbjct 500204 GTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTG-G 500146
Query 153467 CCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCAC 153526
|| || | ||||||| |||| |||||| |||||||||||||| |
Sbjct 500145 TTTCCGGC-----AACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTGTTAT 500091
Query 153527 CACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA--GGTCATTTCGTCGACGCGTACG 153584
| || | | | || ||||| | |||||||| | | || | |||| | ||
Sbjct 500090 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCT-GTCGTTACAAAC- 500033
Query 153585 CATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-GTCGCTGTA 153643
|| ||||| ||||| || || | ||| || || || | ||||| || | || | ||
Sbjct 500032 -AT--ATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG-TATA 499977
Query 153644 CTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT 153703
| ||||| || | || | ||| ||||||||||| ||| | ||| || ||||| ||
Sbjct 499976 TTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACT 499917
Query 153704 TTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757
||||||||| || || |||||| | |||||||| || |||||||| |||||
Sbjct 499916 TTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTG 499863
>seq116
Length=862150
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||||||| ||||| ||||| | | || || || |||||||||||||||
Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || | || | ||||| || | | |||| | ||| ||||| || || ||
Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
| |||||||| || ||| |||| ||||||| | || | ||||||| | ||| |
Sbjct 481762 GACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | ||||| ||||||| || || || || ||||||||
Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655
>seq2
Length=5618958
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || || || | | | ||||||||||| ||||| ||||||
Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || ||| || || | ||| || || | | || | ||| ||||| || |||||
Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| |||||||| || ||| |||| | || | | ||| | ||||||| | ||| |
Sbjct 3063991 AATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 3064049
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || | || | ||||| ||||| |||||||| || ||||| |||||
Sbjct 3064050 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098
>seq32
Length=1919080
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||||||||||| || | ||||| | | || || |||||||| || || ||| |
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || | ||| || || | | || | || || ||||| || ||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || |||||||| ||| | || | ||||| | ||| | ||||| | | || ||
Sbjct 39313 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 39371
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || ||||||||||||||||||||
Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496251693138720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |