Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq32 134 1e-26
seq116 132 3e-26
seq2 131 1e-25
seq66 82.4 5e-11
>seq32
Length=1919080
Score = 134 bits (148), Expect = 1e-26
Identities = 170/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||||||| | | || | ||| | ||| || |||||||| || || |||||| |
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCG--G 39250
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| ||| || | ||||| ||||| || |||||| | ||||| || || |||||| ||
Sbjct 39251 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 39310
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| |
Sbjct 39311 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 39370
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| || | || ||||| || || || || |||||||||||||| ||||||||
Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq116
Length=862150
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
|| || || ||||| ||||| || ||||||||||||||||| || ||| || | |
Sbjct 484297 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCAT 484240
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
|||| || ||||||||||| | ||||||||||| ||||| ||||| ||||||||||
Sbjct 484239 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 484180
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| ||||| ||| || |||| ||||| || |||||| || || || || |
Sbjct 484179 CCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCG 484120
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| || |||| |||||| ||||| ||||||||
Sbjct 484119 TTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 122 bits (134), Expect = 6e-23
Identities = 170/237 (72%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| ||||| | |||||| ||||| || || || ||||| || |||||||| |||
Sbjct 481883 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 481824
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | | ||| || ||||||||||| | |||||||| ||||| || ||
Sbjct 481823 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 481764
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| | |||||| || || |||||| |||| ||| | || ||||| ||| || |
Sbjct 481763 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
| || ||||| || ||||| || |||| || || || || || ||||| ||| |||
Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT-TTTAAAA 481648
Score = 102 bits (112), Expect = 6e-17
Identities = 119/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
||||| |||||||| | |||||||| || || || ||||| |||||||| || |
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATGGTTTT 15146
||||| ||| ||| |||| |||||||| | || ||| || || || ||||| |||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATC-CGATGGTTCAACTTCCAAAGTAATAGTTTT 474135
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
|| || | ||||||||||| |||||||| ||| |||
Sbjct 474134 GCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAA 474097
Score = 93.3 bits (102), Expect = 3e-14
Identities = 114/154 (74%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
|| || ||||| | || || || ||||||||||||||||| || ||| || | |
Sbjct 484069 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCAT 484012
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
|||| || ||||||||||| | ||||||||||| ||||| ||||| ||||||||||
Sbjct 484011 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 483952
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116
| ||||| ||| || |||| ||||||||
Sbjct 483951 CCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108
|||||||| ||||| ||||| ||||||||||| ||||| ||| || ||||
Sbjct 482010 AAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCG 481951
Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168
|||||||| |||||| || || || ||||||||||| |||| |||||| |||||
Sbjct 481950 ATAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAAT 481891
Query 15169 ATTTGCAT 15176
||||||||
Sbjct 481890 ATTTGCAT 481883
>seq2
Length=5618958
Score = 131 bits (144), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025
|| || || | ||| || || ||||||||||| || ||| || || | | | | ||||
Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCG--GATAACGTGCGCCCATCTT 3063947
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| ||||| ||||||||| |||||||||| ||||| || ||||| ||||| || ||
Sbjct 3063948 CCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCT 3064007
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||||| || ||| |||| ||||| ||| | || || || || ||||| ||||
Sbjct 3064008 GAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTT 3064067
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
| || || |||||||| || ||||||||||| |||
Sbjct 3064068 TGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 3064102
>seq66
Length=1297373
Score = 82.4 bits (90), Expect = 5e-11
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
||||| ||||| || || ||| | ||||||||||| || || | | | | | |||
Sbjct 241553 AAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGCAACCATCT 241494
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | || ||||| || || |||||||| | || | ||| || || ||||| ||
Sbjct 241493 TCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGTCCTTATCC 241434
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||| ||| |||| | |||| ||||||||| | ||| | ||||| || | |||
Sbjct 241433 TGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTA 241374
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187
| || || | ||||| || ||||| ||||| ||| ||| ||
Sbjct 241373 TGGCCCGTTAACGTTTTCACGAAAATCTGCATTTTTCAAAAAA 241331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357384482035910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |