Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq32 134 1e-26 seq116 132 3e-26 seq2 131 1e-25 seq66 82.4 5e-11 >seq32 Length=1919080 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | | || | ||| | ||| || |||||||| || || |||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCG--G 39250 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || |||||| | ||||| || || |||||| || Sbjct 39251 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 39310 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| | Sbjct 39311 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 39370 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || || ||||| ||||| || ||||||||||||||||| || ||| || | | Sbjct 484297 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCAT 484240 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 484239 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 484180 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| ||| || |||| ||||| || |||||| || || || || | Sbjct 484179 CCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCG 484120 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || |||| |||||| ||||| |||||||| Sbjct 484119 TTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 122 bits (134), Expect = 6e-23 Identities = 170/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 481883 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 481824 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | | ||| || ||||||||||| | |||||||| ||||| || || Sbjct 481823 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 481764 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | | |||||| || || |||||| |||| ||| | || ||||| ||| || | Sbjct 481763 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || ||||| || ||||| || |||| || || || || || ||||| ||| ||| Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT-TTTAAAA 481648 Score = 102 bits (112), Expect = 6e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| |||||||| | |||||||| || || || ||||| |||||||| || | Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATGGTTTT 15146 ||||| ||| ||| |||| |||||||| | || ||| || || || ||||| ||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATC-CGATGGTTCAACTTCCAAAGTAATAGTTTT 474135 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || | ||||||||||| |||||||| ||| ||| Sbjct 474134 GCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAA 474097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | || || || ||||||||||||||||| || ||| || | | Sbjct 484069 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCAT 484012 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 484011 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 483952 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116 | ||||| ||| || |||| |||||||| Sbjct 483951 CCTGGATTTTTGCTTTAACGTTTTCGATAGTATC 483918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 |||||||| ||||| ||||| ||||||||||| ||||| ||| || |||| Sbjct 482010 AAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCG 481951 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 |||||||| |||||| || || || ||||||||||| |||| |||||| ||||| Sbjct 481950 ATAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAAT 481891 Query 15169 ATTTGCAT 15176 |||||||| Sbjct 481890 ATTTGCAT 481883 >seq2 Length=5618958 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 || || || | ||| || || ||||||||||| || ||| || || | | | | |||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCG--GATAACGTGCGCCCATCTT 3063947 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| ||||||||| |||||||||| ||||| || ||||| ||||| || || Sbjct 3063948 CCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCT 3064007 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| |||| ||||| ||| | || || || || ||||| |||| Sbjct 3064008 GAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTT 3064067 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || |||||||| || ||||||||||| ||| Sbjct 3064068 TGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 3064102 >seq66 Length=1297373 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||| || || ||| | ||||||||||| || || | | | | | ||| Sbjct 241553 AAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGCAACCATCT 241494 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| || || |||||||| | || | ||| || || ||||| || Sbjct 241493 TCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGTCCTTATCC 241434 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| |||| | |||| ||||||||| | ||| | ||||| || | ||| Sbjct 241433 TGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTA 241374 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 | || || | ||||| || ||||| ||||| ||| ||| || Sbjct 241373 TGGCCCGTTAACGTTTTCACGAAAATCTGCATTTTTCAAAAAA 241331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384482035910