Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 145 7e-30 seq116 143 3e-29 >seq32 Length=1919080 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||||||||| || || |||| ||| | ||||| || || |||||||||||||| ||||| Sbjct 39189 TGCTCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATC 39248 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || ||||| ||| || | || ||||||||| | |||||||| ||||| ||||| Sbjct 39249 GGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGG 39308 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || ||||| |||||| ||| | | || || | | ||||| ||||||| | Sbjct 39309 TGGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTT 39367 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || | || ||||| || || |||||||||||||||||||| Sbjct 39368 CGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq116 Length=862150 Score = 143 bits (158), Expect = 3e-29 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | ||||||||||| || | ||||| || ||||| || |||||||| Sbjct 484315 GCACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA 484256 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| ||| || | |||||| ||||| ||||||| |||||||| || ||| Sbjct 484255 GACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 484196 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCT 127061 || || || ||||||||| |||||| ||||| | ||| ||||| ||||| | | Sbjct 484195 GGAATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTT-TTCGATAGTGTCTGACGGTT 484138 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| | || | |||||| ||||||| |||||| ||||| || ||||| Sbjct 484137 CTACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 116 bits (128), Expect = 4e-21 Identities = 131/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||||||||||||| | || || || ||||| || |||||||| Sbjct 484085 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGA 484026 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || | |||||| ||||| ||||||| |||||||| || ||||| Sbjct 484025 CAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 483966 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCG 127055 || || ||||||||| |||||| ||||| | ||| ||||| || |||| Sbjct 483965 AATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTT-TTCGATAGTATCCG 483916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490541070240