Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_011802.1
Length=41941
Score E
Sequences producing significant alignments: (Bits) Value
seq347 381 2e-101
>seq347
Length=3601
Score = 381 bits (422), Expect = 2e-101
Identities = 632/908 (70%), Gaps = 6/908 (1%)
Strand=Plus/Minus
Query 1484 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1543
||| |||| | | ||| ||||| || || |||| ||||||||||| || || | ||
Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807
Query 1544 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1603
|| || || ||||| || ||||| | || |||| | || | | || || || ||
Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747
Query 1604 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1663
|| || || ||||||| |||||| |||| |||||||| || || || || ||
Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687
Query 1664 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 1723
| || | | || || || || ||||| || | | || | ||||| |||||
Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627
Query 1724 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 1782
||||| || || || || | |||||||||||||| | | || || | | | |||||
Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568
Query 1783 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 1842
|| || ||||| | ||| |||| | || |||||||| | ||| ||||
Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508
Query 1843 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 1902
||| ||||| || | ||| ||||| |||| | || || || || || ||||
Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448
Query 1903 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 1962
|| || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| ||
Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388
Query 1963 CTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCG 2022
| |||||||| || || || || ||||| || |||||||||| | ||||| |||
Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328
Query 2023 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 2082
|||||||| || | ||| || || || ||||||||||||| | || || || | |
Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268
Query 2083 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCGGTTGCATGGTCGAG 2142
|| |||||| | |||||| |||||||| | || | |||||||| || ||||| || |
Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208
Query 2143 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 2200
|| |||||||| |||||||||||||| |||||||| ||||| || ||| ||||
Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150
Query 2201 AGCGGATCAGATGCGGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 2260
| ||||||||| ||| | ||||| | ||||| ||| |||||||||||
Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090
Query 2261 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 2320
||||| || || | ||| || | ||||| |||||||| ||| || | ||||| ||||
Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030
Query 2321 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 2380
|| ||||||||||| | | |||||| |||||||| || || || | || || |||||
Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970
Query 2381 TTATATCC 2388
| |||||
Sbjct 1969 TGTTATCC 1962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 134086851666036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |