Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq347 381 2e-101 >seq347 Length=3601 Score = 381 bits (422), Expect = 2e-101 Identities = 632/908 (70%), Gaps = 6/908 (1%) Strand=Plus/Minus Query 1484 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1543 ||| |||| | | ||| ||||| || || |||| ||||||||||| || || | || Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807 Query 1544 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1603 || || || ||||| || ||||| | || |||| | || | | || || || || Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747 Query 1604 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1663 || || || ||||||| |||||| |||| |||||||| || || || || || Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687 Query 1664 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 1723 | || | | || || || || ||||| || | | || | ||||| ||||| Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627 Query 1724 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 1782 ||||| || || || || | |||||||||||||| | | || || | | | ||||| Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568 Query 1783 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 1842 || || ||||| | ||| |||| | || |||||||| | ||| |||| Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508 Query 1843 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 1902 ||| ||||| || | ||| ||||| |||| | || || || || || |||| Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448 Query 1903 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 1962 || || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| || Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388 Query 1963 CTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCG 2022 | |||||||| || || || || ||||| || |||||||||| | ||||| ||| Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328 Query 2023 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 2082 |||||||| || | ||| || || || ||||||||||||| | || || || | | Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268 Query 2083 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCGGTTGCATGGTCGAG 2142 || |||||| | |||||| |||||||| | || | |||||||| || ||||| || | Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208 Query 2143 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 2200 || |||||||| |||||||||||||| |||||||| ||||| || ||| |||| Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150 Query 2201 AGCGGATCAGATGCGGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 2260 | ||||||||| ||| | ||||| | ||||| ||| ||||||||||| Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090 Query 2261 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 2320 ||||| || || | ||| || | ||||| |||||||| ||| || | ||||| |||| Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030 Query 2321 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 2380 || ||||||||||| | | |||||| |||||||| || || || | || || ||||| Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970 Query 2381 TTATATCC 2388 | ||||| Sbjct 1969 TGTTATCC 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134086851666036