Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_011976.1
Length=43016
Score E
Sequences producing significant alignments: (Bits) Value
seq347 351 3e-92
seq748 105 2e-18
>seq347
Length=3601
Score = 351 bits (388), Expect = 3e-92
Identities = 628/913 (69%), Gaps = 8/913 (1%)
Strand=Plus/Minus
Query 20140 AATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGAC 20199
|| ||||| || | |||||| |||| |||| |||| ||| || || ||||| || ||
Sbjct 2870 AACATATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCAC 2811
Query 20200 ACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATGATGGATA 20259
|| || || ||||| || ||||| |||| || || || | || | ||||||||||||
Sbjct 2810 CCCGATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATA 2751
Query 20260 TCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAA 20319
||||| || || || ||||| | ||||| | |||||||| ||||| | ||
Sbjct 2750 ACCTGGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAA 2691
Query 20320 GGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAA 20379
|| || ||| ||| |||||| || |||||||||| || |||| ||||| ||
Sbjct 2690 AGAAAGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAA 2631
Query 20380 ACTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTG-- 20437
| |||||| |||||||| || | ||||||| |||||| | | |||| || |||
Sbjct 2630 AGATGTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGC--TTGAT 2573
Query 20438 CCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCCATGAC 20497
||||| |||||||| | | || ||| | || | |||||| | | |||||||
Sbjct 2572 CCGGCTGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGAC 2513
Query 20498 AAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCT 20557
| | ||||||||||| || || || ||||| | | || ||||| || |||||
Sbjct 2512 AGCAAACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCA 2453
Query 20558 CGCGACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTG 20617
|| || ||||| || || |||||||| | |||||| ||||| | |||| |||||||||
Sbjct 2452 CGTGATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTG 2393
Query 20618 TGTAGCTTATAGAACCACTCAGCCGATTTGCGCTTTAGCCTTCCATCGGTAGAGCGGTCT 20677
||||| | || ||||| || |||| ||| ||||||| | ||||| || | |||||
Sbjct 2392 TGTAGTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCA 2333
Query 20678 GCTCTTTTAGCCAGAACCATATCAGCGCCATCTAGCCACCTATCAATGAGTTTAGGAATA 20737
| ||||||||| || | |||||| || || ||||| | ||||| | | || ||
Sbjct 2332 ATGCGTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATG 2273
Query 20738 ACATCGATAGGGTCTTGCAGATCAACGTCGATTGGGATAACAGCTTCACCAGTAGCATTA 20797
| || | || |||| | ||| || || || | |||| || || ||||| ||||
Sbjct 2272 ATATTTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGT 2213
Query 20798 TCAAGACCTGCGAATAGGGCTGGCTCTTTGCCAAAGTTTCTAGTGAA--CGATAGTGGTA 20855
|| | |||||||| || || || ||||| |||||||||| ||| || ||||| ||
Sbjct 2212 TCTAATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGCCTTA 2153
Query 20856 CCACTAATTTATCAGATACAGCAAGCGCATTGATGATTGATTCTGTCGAATCGCTGCTTC 20915
|| | | |||||||| | | |||| || | || || || | || |
Sbjct 2152 --ACCATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTAC 2095
Query 20916 CGTCATTGATGAAGACTATCTCAACTTCATGCTCCTTTAGGCCTTCAAACTCGCGTACCG 20975
| ||||| ||||| |||| ||| | | || | ||||| || ||| || | |||||
Sbjct 2094 CATCATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCG 2035
Query 20976 TTTTATAAAAAATAGGTATCGTGGCCTCTTCGTTAAAGACCGGAACGACTAAAGAAATTT 21035
|||||||||||| ||||| | ||||| ||||| || || || ||||| ||||| |
Sbjct 2034 ATTTATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCT 1975
Query 21036 TCATTTCGTATCC 21048
|||| | |||||
Sbjct 1974 TCATGTGTTATCC 1962
>seq748
Length=7821
Score = 105 bits (116), Expect = 2e-18
Identities = 233/347 (67%), Gaps = 2/347 (1%)
Strand=Plus/Minus
Query 27564 TCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTG 27623
||||||||||||||| |||||||||||| ||| |||| || ||| | || |||||
Sbjct 7288 TCCAAGCATTTGCATAGAACCATTAATTCCTACAATAATTTCTGTGATATATTTATCTTG 7229
Query 27624 CCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACC 27683
|| | ||||||||||| ||||| || || |||| || | ||| || ||| ||
Sbjct 7228 ACCATTTTGGTCTTGCCATTTTCTAGTCTGCAAGCTTCCTTCAATATATACTTGAGAGCC 7169
Query 27684 TTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCA 27743
|||| | ||| | || | | ||| || | ||| |||| || | | | |||||
Sbjct 7168 TTTTCGTAAATATTCTCCGGCTATTTCTGCTAATTTTCCAAATAAAACTATTCTGTGCCA 7109
Query 27744 TTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCGAC 27803
|||||| | || || || || || | ||| || ||||| ||| |||||||| |
Sbjct 7108 TTCAGTTTTTTCTTTCATGTCTCCGGTATTTTTGTCACGCCAGCTCTCAGATGTAGCAAG 7049
Query 27804 TGTCAGGTTAGCGAACGC-CGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCGA 27862
|| | || || | || | ||| | | ||| |||||| | || || | |||||| |
Sbjct 7048 CGTGATATTCGCAACAGCACTTCCGTTA-GGTATATAACGTATATCTGGATTTTGCCCTA 6990
Query 27863 CCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCATTTAT 27909
| || | | || || |||||||| ||||| |||| |||| ||
Sbjct 6989 AATGTCCAATTAAAATTACTTTATTTACACCTCTGCTAGTCATTGAT 6943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137526781158936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |