Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq347 351 3e-92 seq748 105 2e-18 >seq347 Length=3601 Score = 351 bits (388), Expect = 3e-92 Identities = 628/913 (69%), Gaps = 8/913 (1%) Strand=Plus/Minus Query 20140 AATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGAC 20199 || ||||| || | |||||| |||| |||| |||| ||| || || ||||| || || Sbjct 2870 AACATATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCAC 2811 Query 20200 ACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATGATGGATA 20259 || || || ||||| || ||||| |||| || || || | || | |||||||||||| Sbjct 2810 CCCGATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATA 2751 Query 20260 TCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAA 20319 ||||| || || || ||||| | ||||| | |||||||| ||||| | || Sbjct 2750 ACCTGGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAA 2691 Query 20320 GGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAA 20379 || || ||| ||| |||||| || |||||||||| || |||| ||||| || Sbjct 2690 AGAAAGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAA 2631 Query 20380 ACTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTG-- 20437 | |||||| |||||||| || | ||||||| |||||| | | |||| || ||| Sbjct 2630 AGATGTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGC--TTGAT 2573 Query 20438 CCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCCATGAC 20497 ||||| |||||||| | | || ||| | || | |||||| | | ||||||| Sbjct 2572 CCGGCTGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGAC 2513 Query 20498 AAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCT 20557 | | ||||||||||| || || || ||||| | | || ||||| || ||||| Sbjct 2512 AGCAAACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCA 2453 Query 20558 CGCGACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTG 20617 || || ||||| || || |||||||| | |||||| ||||| | |||| ||||||||| Sbjct 2452 CGTGATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTG 2393 Query 20618 TGTAGCTTATAGAACCACTCAGCCGATTTGCGCTTTAGCCTTCCATCGGTAGAGCGGTCT 20677 ||||| | || ||||| || |||| ||| ||||||| | ||||| || | ||||| Sbjct 2392 TGTAGTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCA 2333 Query 20678 GCTCTTTTAGCCAGAACCATATCAGCGCCATCTAGCCACCTATCAATGAGTTTAGGAATA 20737 | ||||||||| || | |||||| || || ||||| | ||||| | | || || Sbjct 2332 ATGCGTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATG 2273 Query 20738 ACATCGATAGGGTCTTGCAGATCAACGTCGATTGGGATAACAGCTTCACCAGTAGCATTA 20797 | || | || |||| | ||| || || || | |||| || || ||||| |||| Sbjct 2272 ATATTTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGT 2213 Query 20798 TCAAGACCTGCGAATAGGGCTGGCTCTTTGCCAAAGTTTCTAGTGAA--CGATAGTGGTA 20855 || | |||||||| || || || ||||| |||||||||| ||| || ||||| || Sbjct 2212 TCTAATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGCCTTA 2153 Query 20856 CCACTAATTTATCAGATACAGCAAGCGCATTGATGATTGATTCTGTCGAATCGCTGCTTC 20915 || | | |||||||| | | |||| || | || || || | || | Sbjct 2152 --ACCATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTAC 2095 Query 20916 CGTCATTGATGAAGACTATCTCAACTTCATGCTCCTTTAGGCCTTCAAACTCGCGTACCG 20975 | ||||| ||||| |||| ||| | | || | ||||| || ||| || | ||||| Sbjct 2094 CATCATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCG 2035 Query 20976 TTTTATAAAAAATAGGTATCGTGGCCTCTTCGTTAAAGACCGGAACGACTAAAGAAATTT 21035 |||||||||||| ||||| | ||||| ||||| || || || ||||| ||||| | Sbjct 2034 ATTTATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCT 1975 Query 21036 TCATTTCGTATCC 21048 |||| | ||||| Sbjct 1974 TCATGTGTTATCC 1962 >seq748 Length=7821 Score = 105 bits (116), Expect = 2e-18 Identities = 233/347 (67%), Gaps = 2/347 (1%) Strand=Plus/Minus Query 27564 TCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTG 27623 ||||||||||||||| |||||||||||| ||| |||| || ||| | || ||||| Sbjct 7288 TCCAAGCATTTGCATAGAACCATTAATTCCTACAATAATTTCTGTGATATATTTATCTTG 7229 Query 27624 CCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACC 27683 || | ||||||||||| ||||| || || |||| || | ||| || ||| || Sbjct 7228 ACCATTTTGGTCTTGCCATTTTCTAGTCTGCAAGCTTCCTTCAATATATACTTGAGAGCC 7169 Query 27684 TTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCA 27743 |||| | ||| | || | | ||| || | ||| |||| || | | | ||||| Sbjct 7168 TTTTCGTAAATATTCTCCGGCTATTTCTGCTAATTTTCCAAATAAAACTATTCTGTGCCA 7109 Query 27744 TTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCGAC 27803 |||||| | || || || || || | ||| || ||||| ||| |||||||| | Sbjct 7108 TTCAGTTTTTTCTTTCATGTCTCCGGTATTTTTGTCACGCCAGCTCTCAGATGTAGCAAG 7049 Query 27804 TGTCAGGTTAGCGAACGC-CGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCGA 27862 || | || || | || | ||| | | ||| |||||| | || || | |||||| | Sbjct 7048 CGTGATATTCGCAACAGCACTTCCGTTA-GGTATATAACGTATATCTGGATTTTGCCCTA 6990 Query 27863 CCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCATTTAT 27909 | || | | || || |||||||| ||||| |||| |||| || Sbjct 6989 AATGTCCAATTAAAATTACTTTATTTACACCTCTGCTAGTCATTGAT 6943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137526781158936