Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 2e-29
seq32 141 8e-29
seq116 129 5e-25
seq21 87.8 2e-12
>seq2
Length=5618958
Score = 143 bits (158), Expect = 2e-29
Identities = 171/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168
|||| || || ||||| | | || | |||| || || |||||||| || ||||| |
Sbjct 3063867 TTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGT 3063926
Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
|| | || ||| |||||||| || || ||| ||||||| ||||| || || |
Sbjct 3063927 CGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTG 3063986
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||||||||||||||| |||||||| |||| ||| | |||||||||| ||
Sbjct 3063987 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 3064046
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| | ||||| |||||||| || |||||||| || |||||||||||
Sbjct 3064047 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098
>seq32
Length=1919080
Score = 141 bits (156), Expect = 8e-29
Identities = 176/239 (74%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163
|| |||| ||| || || | | || ||| ||||| | || ||||| ||||| |||||
Sbjct 39183 TTTTTTTGCTCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATT 39242
Query 45164 ATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221
||||||| ||| | | | ||| |||||||| ||||| ||| | ||||||||||||
Sbjct 39243 ATAATCG--GACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGC 39300
Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281
||||| || ||||| || ||||| || ||||| || ||| | ||| | |||||
Sbjct 39301 TGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCC 39360
Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | ||||| || ||||| | || ||||| ||||| |||||||||||||| |||||
Sbjct 39361 GAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
>seq116
Length=862150
Score = 129 bits (142), Expect = 5e-25
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||||||||| | |||||| | || || || ||||||||||| || || |||| | |
Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAAT--CAG 484255
Query 45174 ACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | | ||| ||||| ||||| || || | ||||| || |||||||| || |
Sbjct 484254 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 484195
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
|||| ||||| || || || |||||| ||| | ||| | ||||| || | || |
Sbjct 484194 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTA 484135
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| | ||| | |||||| ||||| | |||||| ||||| ||||||||
Sbjct 484134 CTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
||||| || || || | ||||| |||||||| || || ||||| ||||| |||||||||
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||| | ||| | || || || | || ||||| | ||||| ||||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||| ||||||||||| ||||||||
Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCAT 474105
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/149 (74%), Gaps = 4/149 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | |||||| | ||||| || ||||||||||| || || ||||
Sbjct 484087 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT-- 484030
Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
| ||| | | | ||| ||||| ||||| || || | ||||| || |||||||| |
Sbjct 484029 CAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 483970
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTT 45257
| ||||| ||||| || || || ||||||
Sbjct 483969 GAGGAATACCTTCCTTGTCCTGGATTTTT 483941
>seq21
Length=2241434
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/174 (72%), Gaps = 4/174 (2%)
Strand=Plus/Minus
Query 102360 TCAACGTTTCCCAAGTCGCCGACGTGCCGTATGAT--TGAATCGGGCGCACCATGATCCA 102417
||||| || ||||| || |||| || ||| | || | | | ||| || ||||| ||
Sbjct 1381837 TCAACATTGCCCAAATCACCGATATGACGT-TCATCATCAGT-GGGTGCTCCATGCTCTT 1381780
Query 102418 TGTTGAACGGATTGAAATGTTCGCCGGCCGAGGTGCATCCGTTGCTCATGTCTCCGAATT 102477
| ||| | ||||| ||||| | ||||| || ||||| ||||| | |||| |||||||
Sbjct 1381779 TATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCGAATT 1381720
Query 102478 CGTGAACGTGAAAGCCGTGCAAACCTTTCGACAAACCGATTATGTAGCCAGTTA 102531
||||||| ||||| || || || || || || || || |||| | |||||||
Sbjct 1381719 CGTGAACATGAAAACCATGTAATCCCTTAGATAATCCATTTATTTCTCCAGTTA 1381666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451993448030960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |