Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq32 141 8e-29 seq116 129 5e-25 seq21 87.8 2e-12 >seq2 Length=5618958 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || || ||||| | | || | |||| || || |||||||| || ||||| | Sbjct 3063867 TTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGT 3063926 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | || ||| |||||||| || || ||| ||||||| ||||| || || | Sbjct 3063927 CGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTG 3063986 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||||||||| |||||||| |||| ||| | |||||||||| || Sbjct 3063987 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 3064046 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| |||||||| || |||||||| || ||||||||||| Sbjct 3064047 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq32 Length=1919080 Score = 141 bits (156), Expect = 8e-29 Identities = 176/239 (74%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 || |||| ||| || || | | || ||| ||||| | || ||||| ||||| ||||| Sbjct 39183 TTTTTTTGCTCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATT 39242 Query 45164 ATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 ||||||| ||| | | | ||| |||||||| ||||| ||| | |||||||||||| Sbjct 39243 ATAATCG--GACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGC 39300 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 ||||| || ||||| || ||||| || ||||| || ||| | ||| | ||||| Sbjct 39301 TGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCC 39360 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| | || ||||| ||||| |||||||||||||| ||||| Sbjct 39361 GAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq116 Length=862150 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | |||||| | || || || ||||||||||| || || |||| | | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAAT--CAG 484255 Query 45174 ACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| ||||| ||||| || || | ||||| || |||||||| || | Sbjct 484254 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 484195 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| || || || |||||| ||| | ||| | ||||| || | || | Sbjct 484194 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTA 484135 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | ||| | |||||| ||||| | |||||| ||||| |||||||| Sbjct 484134 CTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | ||||| |||||||| || || ||||| ||||| ||||||||| Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||| | || || || | || ||||| | ||||| |||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||||||||||| |||||||| Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCAT 474105 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | |||||| | ||||| || ||||||||||| || || |||| Sbjct 484087 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT-- 484030 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | ||| | | | ||| ||||| ||||| || || | ||||| || |||||||| | Sbjct 484029 CAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 483970 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTT 45257 | ||||| ||||| || || || |||||| Sbjct 483969 GAGGAATACCTTCCTTGTCCTGGATTTTT 483941 >seq21 Length=2241434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 102360 TCAACGTTTCCCAAGTCGCCGACGTGCCGTATGAT--TGAATCGGGCGCACCATGATCCA 102417 ||||| || ||||| || |||| || ||| | || | | | ||| || ||||| || Sbjct 1381837 TCAACATTGCCCAAATCACCGATATGACGT-TCATCATCAGT-GGGTGCTCCATGCTCTT 1381780 Query 102418 TGTTGAACGGATTGAAATGTTCGCCGGCCGAGGTGCATCCGTTGCTCATGTCTCCGAATT 102477 | ||| | ||||| ||||| | ||||| || ||||| ||||| | |||| ||||||| Sbjct 1381779 TATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCGAATT 1381720 Query 102478 CGTGAACGTGAAAGCCGTGCAAACCTTTCGACAAACCGATTATGTAGCCAGTTA 102531 ||||||| ||||| || || || || || || || || |||| | ||||||| Sbjct 1381719 CGTGAACATGAAAACCATGTAATCCCTTAGATAATCCATTTATTTCTCCAGTTA 1381666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993448030960