Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013597.1 Length=43970 Score E Sequences producing significant alignments: (Bits) Value seq367 98.7 3e-16 >seq367 Length=84945 Score = 98.7 bits (108), Expect = 3e-16 Identities = 603/947 (64%), Gaps = 34/947 (4%) Strand=Plus/Plus Query 43045 TGGCAGGAAGCCGTAGTACAATGGCTTGATGAAAAGCCAAAGCGCAAACAAGATAGAAAC 43104 ||||| ||||| || | |||||| ||||||| || |||||||| || || | || Sbjct 12979 TGGCAAGAAGCAGTGCTTTTGTGGCTTAATGAAAAACCTGAGCGCAAAGAAAATCGTAAT 13038 Query 43105 ATGCTTTACGGG-TTAGTATGGCTTGATAAATATCTTGGTGATAAAAAACTCAACGAAAT 43163 ||||| ||||| |||| |||||| ||| |||| || || | | || |||| || || Sbjct 13039 ATGCTATACGGACTTAG-ATGGCTAGATCAATACCTAGGCAAAACCAAGCTCATTGACAT 13097 Query 43164 TGACCGCACTTTAATAAAATTCATCCAATATGAAAAAGCGAAGGAAGGCGTTAAGGCAAG 43223 | || |||||| | ||| || | |||| | ||| || || | Sbjct 13098 TAACAAATATTTAATTGATGAAATCAAAAAAACAAAACAAATTTCAGGAGTAAAAAATCG 13157 Query 43224 AACAATTAATGCCGTTTTGCAGCAGATAAGAGTGATATTAAGAGCGGCGGTTGAGTG-GG 43282 || | ||||| || || || || || ||||| | | | | || |||| || Sbjct 13158 CACTGTAAATGCAGTATTACAACAAATTAGAGTTGTGCTTAAATGTGCATATGAGCATGG 13217 Query 43283 ATTGGTTGGATAAATGCCCAGCAATAAAATTCTTACCTGAACCCAAACGACGTGTACGAT 43342 ||| || |||||| || |||| ||||| || ||||| | ||| | |||| | Sbjct 13218 ATTA-TTAGATAAAATACCGCCAATTAAATTGTTGAAAGAACCAACCCGAAGAATACGTT 13276 Query 43343 GGTTGACCCAACACGAAGAAATAAGGCTCATAGAAGAATTGCCGGAGCACTTAAAGCCAA 43402 |||| || || | ||||||| | | | | | |||| | |||||||| | ||||| | Sbjct 13277 GGTTAACAGAATATGAAGAAAAACGTTTAACGGTAGAACTACCGGAGCATCTGAAGCCTA 13336 Query 43403 TTGTTCAATTTGCTATTTTGACTGGGTTAAGAATGTCGAACATCACCCAGCTAAAATGGT 43462 ||||| | |||||| | || |||||| | ||||| || || || | |||| |||| Sbjct 13337 TTGTTAACTTTGCTTTGAATACAGGGTTACGTATGTCCAATATTACAAATTTAAAGTGGT 13396 Query 43463 CGCAAATTGACTTATCCAAAAGAC---AGGCTTGGATAAATTCGGAACAATCAAAAACAG 43519 | || |||| ||| || |||| | |||||||| || | || ||||||||||| Sbjct 13397 CACAGGTTGA--TATG-AATAGACGCCAAGCTTGGATTCATGCAGATGAATCAAAAACAA 13453 Query 43520 GTAATAGC-ATTGGCGTACCGTTAAACGACAAAGCTATTGAAGTGAT--TGTATCA-CAA 43575 | ||| |||||| | | | || | ||| | | | || | | || ||| Sbjct 13454 ACCA-AGCTATTGGCATTTCTCTGAATCAAGCTGCTTTAACAATAATACGGGAACAGCAA 13512 Query 43576 TTTGGCAAGCACAAAGAAAACGTGTTCACATATAAAGGCAAGCCGGTTCGCATTGCAAAC 43635 || | |||| ||| | | || || ||| ||| || | | ||| Sbjct 13513 ---GGATATCACAGAGAGTATAT-TTTACTTATCAAGATAATAGAATAAAAAACGCAGGT 13568 Query 43636 ACTAAAGCGTTCCGTGCGGCATTACAACGAGCTGGAATCAAAGACTTCCGTTTTCACGAC 43695 |||||| | || ||| | | |||||||| | ||| |||| |||||| ||| Sbjct 13569 GCTAAAGGATGGCGAAAAGCAGTTTATCGAGCTGGGCTGGGAGATTTCCATTTTCATGAC 13628 Query 43696 TTGCGCCATACTTGGGCGACAAGACACATTATGTCGGGAACGCCGTTATATGTGCTGCAA 43755 || | || || ||||| || | ||||| ||| | ||||| || |||| || | ||| Sbjct 13629 CTGTGTCACACATGGGCAACTCGCCACATAATGGCAGGAACCCCACTATACGTTTTACAA 13688 Query 43756 GAGTTGGGCGGGTGGAGTAAATCAGACACCGTGAGAAAATATGCGCATTTATCTGTTGAG 43815 ||| |||| || ||||| || |||||||||| | |||||||| || | || | Sbjct 13689 GAGCTGGGAGGCTGGAGCAAGGCAGACACCGTACGTAAATATGCACACCT-TCAACACAA 13747 Query 43816 CATTTACAAAACCACGC-CAAC-AATGTTCAACTTTTTGCCACAAAATTGGCACA-AACA 43872 | ||| || | ||||| ||| || ||| | || |||| | ||| |||| || | Sbjct 13748 CTTTTGCAGCAACACGCTGAACGCATCGTCA--CTAGTGGCACAGATTTGACACAGAATA 13805 Query 43873 -----CAAAGAGGAAAAA----ACCTTATCAATAACTAACTAATTGATAAAGCTATAAAA 43923 ||| || || | | ||| | || || ||||| || | |||| Sbjct 13806 AGAATTAAAAAGATAAGAGGCCAGCTTTTGGCCTCTTATCTTATTGAATAACATTAAAAA 13865 Query 43924 TTTGGTGGAGATAATCGGGATCGAACCGACGACCTCTTGAATGCCAT 43970 |||||||||| ||| ||||||||||||| ||||||||| ||||||| Sbjct 13866 TTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCAT 13912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140579518587984