Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq429 176 1e-39 >seq429 Length=112147 Score = 176 bits (194), Expect = 1e-39 Identities = 220/302 (73%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 1869 CGTTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATC 1928 || |||| ||| || | | | |||||| || | || || || || || || |||| Sbjct 10715 CGCTTCATCGCCTCTAATAAAATGTCCTGCACCTGACGCTTTGAGTCGCGTCGCTCCATG 10656 Query 1929 ACCAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGT 1988 |||| |||||| || || | | || || ||||||||||| ||||| || ||| | || Sbjct 10655 ACCAGTTCATCGACGGTATCGGTGGCGACAATGTGGTGAATGAATACCGGGCGCGGGTGC 10596 Query 1989 CCGGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGG 2048 ||||| || ||||| || ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 10595 CCGGCCTGAGCCTGTCGGGTCGGGCCGATGCGCTCGATAATCTGCTGGTACTGCTCAAGG 10536 Query 2049 TCCCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGA 2108 ||||||||||| ||| || ||| | ||| |||||||| || || || | || || Sbjct 10535 CCCCACCAGTGGGAGAAAAACACCAGGACATTACCGCCGTCCTGAAGGTTCAGCCCGTGC 10476 Query 2109 CCGGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATC 2168 ||||| ||||| || ||||| || || | || || || || ||||| |||| ||| Sbjct 10475 CCGGCGCTGGCGGGGTGGGCGAACAGTAGCGGTATCCGTCCGGCGTTCCAGTCGCTGATT 10416 Query 2169 GT 2170 || Sbjct 10415 GT 10414 Score = 91.5 bits (100), Expect = 3e-14 Identities = 252/381 (66%), Gaps = 13/381 (3%) Strand=Plus/Minus Query 4848 TCACCGGCCAGCCACGCCAATACGCGGCCTTCAATGTTGGACAGATCGGCCACGACCAGC 4907 || || ||||||||||||| || |||||||| || ||| ||| |||| || || ||| Sbjct 2454 TCGCCCGCCAGCCACGCCAGCACCCGGCCTTCGATATTGCTCAGGTCGGATACTACTAGC 2395 Query 4908 TTTTTATGGGTTGGTGCAATCAGA--CAGCTGCGCAGCGCGCTGCTGGTCAGCGCCATGA 4965 || ||| || | || | || ||| ||| || || ||||| |||| ||| | Sbjct 2394 TTCTTACC--TTCGGGCGTGCGGATGCAGGCGCGTAGTGCAGAACTGGTGAGCGGCATAA 2337 Query 4966 CATCGTCAAATACTAAATCCACACAACCGGCTTTCATGGCATCAATGCCAACCGTGATCG 5025 | ||| || | ||||| | || ||||| || | || || | ||| Sbjct 2336 CGTCG---AACGCCAAATCTGCCACGCCCTTTTTCAGCGCCTTTATCCCCAGGTCAATCT 2280 Query 5026 CTTCTTGGCTGAGCGTGG---GGCGGGGCAGGTTGTGCGGCTGAAACAGCCGCCCCGCCC 5082 || | || ||| | ||| | || || ||||||| |||||||| ||||||||||||| Sbjct 2279 CTGCCTG--TGA-CATGGATGGCCGAGGGAGGTTGTCGGGCTGAAAAAGCCGCCCCGCCC 2223 Query 5083 ACCGTCCGGTGCGACTGGCCCCGTTGAATTGCAGCGTGCCGCGCAGGCGGCCATCGCGGC 5142 | || ||||| || ||| || || ||| |||||||| | ||||||||||||| Sbjct 2222 AGCGCCCGGTACGTGAGGCACCACAAAACTGCTTGGTGCCGCGTAAACGGCCATCGCGGC 2163 Query 5143 TGGTGCAGTTCAGCAGCGCCTGATACTTAGCGGTGCTGGTGGTGCTGGCTTGCCTGCGGA 5202 || | | | | || || |||||| ||||||||| || | || ||| |||| Sbjct 2162 TGACGGATTCGACCAATTTCTCGTACTTACTGGTGCTGGTTGTACAGGATTGGAGACGGA 2103 Query 5203 TGGACAGCAGTTCCCGCACCG 5223 | |||| |||| |||| || Sbjct 2102 CGATCAGCCGTTCGCGCAACG 2082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117232797118032