Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq116 150 4e-31 seq32 109 1e-18 seq2 107 5e-18 >seq116 Length=862150 Score = 150 bits (166), Expect = 4e-31 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||| | |||||| |||| ||| || | |||||||||| ||| Sbjct 484289 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTG 484230 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| | |||||||||||| ||| ||| ||||| ||||| || || Sbjct 484229 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TT 484171 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 |||| || ||| ||||| ||||||| | |||||| ||||| |||||||| || || | Sbjct 484170 TTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGG 484111 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | |||||| ||||| ||||| Sbjct 484110 TCAAAGTTTTAACAAATATTTG 484089 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | |||||| |||| ||| || | |||||||||| ||| || || Sbjct 484054 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 483995 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || ||||| | |||||||||||| ||| ||| ||||| ||||| || |||||| || Sbjct 483994 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 483936 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || | || ||| || ||||| Sbjct 483935 AACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 199504 ACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGA 199562 |||||||||||| ||| ||| ||||| ||||| || |||||| || ||| ||||| Sbjct 482008 ACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGA 481950 Query 199563 CGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622 || |||| || |||||| ||||| ||||| || ||||| || | |||||| ||||| | Sbjct 481949 TAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATA 481890 Query 199623 TTTG 199626 |||| Sbjct 481889 TTTG 481886 >seq32 Length=1919080 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || | || || || ||||| | || || || | ||| || | ||||| Sbjct 39207 CAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATC 39266 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| |||||||| ||||| || | || |||||||| || |||||| ||| || Sbjct 39267 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 39326 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| || || ||||| ||||| | | ||| || || | ||||| || Sbjct 39327 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 39386 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || ||||| |||||||| || Sbjct 39387 CTTGCCCGTTAGGGTTTTTACAAAAATCTG 39416 >seq2 Length=5618958 Score = 107 bits (118), Expect = 5e-18 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | ||| ||||| | || || | |||||||||| ||||| || Sbjct 3063902 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCA 3063961 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||| || || || ||| ||| |||||| |||||||| || ||| Sbjct 3063962 GCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 3064021 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | || || ||||| || || || || || || |||||| Sbjct 3064022 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 3064081 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || |||||||| |||||| Sbjct 3064082 TTAACGAAAATTTG---CATTTT 3064101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895528885642