Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq116 150 4e-31
seq32 109 1e-18
seq2 107 5e-18
>seq116
Length=862150
Score = 150 bits (166), Expect = 4e-31
Identities = 156/202 (77%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
||| ||||| || |||||||| | |||||| |||| ||| || | |||||||||| |||
Sbjct 484289 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTG 484230
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
|| || || ||||| | |||||||||||| ||| ||| ||||| ||||| || ||
Sbjct 484229 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TT 484171
Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604
|||| || ||| ||||| ||||||| | |||||| ||||| |||||||| || || |
Sbjct 484170 TTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGG 484111
Query 199605 TGAGAGTTTTCACAAAAATTTG 199626
| | |||||| ||||| |||||
Sbjct 484110 TCAAAGTTTTAACAAATATTTG 484089
Score = 98.7 bits (108), Expect = 2e-15
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || |||||||| | |||||| |||| ||| || | |||||||||| ||| || ||
Sbjct 484054 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 483995
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
|| ||||| | |||||||||||| ||| ||| ||||| ||||| || |||||| ||
Sbjct 483994 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 483936
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || || | || ||| || |||||
Sbjct 483935 AACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900
Score = 91.5 bits (100), Expect = 3e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 199504 ACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGA 199562
|||||||||||| ||| ||| ||||| ||||| || |||||| || ||| |||||
Sbjct 482008 ACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGA 481950
Query 199563 CGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622
|| |||| || |||||| ||||| ||||| || ||||| || | |||||| ||||| |
Sbjct 481949 TAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATA 481890
Query 199623 TTTG 199626
||||
Sbjct 481889 TTTG 481886
>seq32
Length=1919080
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| || | || || || ||||| | || || || | ||| || | |||||
Sbjct 39207 CAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATC 39266
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| |||||||| ||||| || | || |||||||| || |||||| ||| ||
Sbjct 39267 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 39326
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||||||| || || ||||| ||||| | | ||| || || | ||||| ||
Sbjct 39327 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 39386
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| || ||||| |||||||| ||
Sbjct 39387 CTTGCCCGTTAGGGTTTTTACAAAAATCTG 39416
>seq2
Length=5618958
Score = 107 bits (118), Expect = 5e-18
Identities = 146/203 (72%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|||||||||||||| | ||| ||||| | || || | |||||||||| ||||| ||
Sbjct 3063902 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCA 3063961
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
||||| || | ||| || || || ||| ||| |||||| |||||||| || |||
Sbjct 3063962 GCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 3064021
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
|| ||| | ||||| | | || || ||||| || || || || || || ||||||
Sbjct 3064022 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 3064081
Query 199613 TTCACAAAAATTTGGTACATTTT 199635
|| || |||||||| ||||||
Sbjct 3064082 TTAACGAAAATTTG---CATTTT 3064101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178895528885642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |