Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq116 113 5e-20 seq2 104 3e-17 seq66 89.7 6e-13 >seq116 Length=862150 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | ||| |||||||| || ||||| || || Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || | ||| ||||| || || ||||| ||||||||||| | || Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||||||| ||| || | ||| | || | | | ||||| || ||| || Sbjct 484192 ATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| ||||| || |||| ||||||||||| ||||||||| Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| ||||||||| |||||||| || ||||| || || | ||||| | Sbjct 484073 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 484014 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||| ||||| || || ||||| ||||||||||| | || | | ||||| Sbjct 484013 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 483954 Query 46498 GTCCATGATCTT 46509 |||| ||| || Sbjct 483953 GTCCTGGATTTT 483942 >seq2 Length=5618958 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||||||| || || |||||||||| |||||| | || || Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||| ||||||||||| || || || || | || | || || || ||| Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | |||||| | || || |||| || || |||||| Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || |||||||| || ||||||||||| Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 >seq66 Length=1297373 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46375 TAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCG 46434 ||||||||| |||| ||| | || ||||||| || || ||||| || |||| Sbjct 241560 TAAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGCA 241501 Query 46435 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTC 46494 | || || |||||||||||||| | ||||| || |||| | | || | || || Sbjct 241500 ACCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGTC 241441 Query 46495 CTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGT 46554 ||| ||| ||||| | || | ||| | | || ||| ||| ||| |||| | || Sbjct 241440 CTTATCCTGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAGT 241381 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 || ||| | |||||| | |||||| || || || |||||||| || ||| Sbjct 241380 GAGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCATTTTTCAAAAA 241332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226204981520