Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq32 123 2e-23
seq116 114 9e-21
seq2 100 2e-16
seq21 84.2 2e-11
>seq32
Length=1919080
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||||||||||||| || | ||| || ||| ||||||||| ||||||||||||| |
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| |||||||| || || | ||||| || || ||||| || | ||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| || |||||||| | || || | || || ||| || ||||| | | ||| |
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATA--GTGTCCGAGGGTTCGA 39370
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||| || || || ||||||| |||||||| || ||||||||
Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
>seq116
Length=862150
Score = 114 bits (126), Expect = 9e-21
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||| || | ||| ||| |||||||| || ||||| | |
Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||| ||||| || |||| || ||||||||||| || | ||
Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| |||||| ||||| | ||| || ||||||| ||| |
Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATA--GTGTCTGACGGTTCTA 484135
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || ||||| || || |||||||| || || || |||||
Sbjct 484134 CTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 93.3 bits (102), Expect = 3e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||||||||| ||| ||| |||||||| || ||||| | |
Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||| ||||| || |||| || ||||||||||| || | ||
Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643
| ||||| ||||| |||||| |||||
Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAA 483934
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||||||| | |||||||| | || |||||| || || || || ||||
Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| ||| ||| ||||| ||||| || |||| || ||||| || ||||| | ||
Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
|| |||||||| || ||||| ||||| || | | ||||| | || ||
Sbjct 481762 GACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAAC 481703
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || ||||| || || || || || ||||||||||||||
Sbjct 481702 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655
Score = 82.4 bits (90), Expect = 5e-11
Identities = 110/151 (73%), Gaps = 4/151 (3%)
Strand=Plus/Minus
Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630
||||| || || ||||||| ||||| |||||||| | ||| | ||||| || ||
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 39631 ATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688
||||| ||||| | ||| || || || | ||| || ||||||||||| ||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATA--GTATCCGATGGTTCAACTTCCAAAGTAATAGTTT 474136
Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || ||||| |||||||| ||||| |||||
Sbjct 474135 TGCCAGTTAATGTTTTTACAAAGATTTGCAT 474105
>seq2
Length=5618958
Score = 100 bits (110), Expect = 2e-16
Identities = 169/239 (71%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543
|||| || ||| || || | ||| |||||||| ||||| || || |||||||| |||
Sbjct 3063864 CAATTAT-GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTA 3063922
Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603
|| |||| || ||| |||| |||||||| || || | || || ||||| || |||
Sbjct 3063923 TAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGA 3063982
Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCT 39660
|| | || | ||||||||| || | | |||| | || | || || || |||||
Sbjct 3063983 TCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATA--GTGTCG 3064039
Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || ||||||||||| ||||| || || | |||||| ||||| || |||||
Sbjct 3064040 GAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098
>seq21
Length=2241434
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574
|| || |||||||| | ||| ||||| |||||| ||| | || || ||||||| ||
Sbjct 1381831 TTGCCCAAATCACCGATATGACGTTCATCATCAGTGGGTGCTCCATGCTCTTTATTGCAA 1381772
Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGTATA 42634
||||||||||| |||| || || || || || || || | || || ||||| || | |
Sbjct 1381771 GGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCGAATTCGTGAACA 1381712
Query 42635 TGAAAACCGTG 42645
|||||||| ||
Sbjct 1381711 TGAAAACCATG 1381701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347362292863358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |