Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq32 123 2e-23 seq116 114 9e-21 seq2 100 2e-16 seq21 84.2 2e-11 >seq32 Length=1919080 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||||||||||||| || | ||| || ||| ||||||||| ||||||||||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || || | ||||| || || ||||| || | || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | || || | || || ||| || ||||| | | ||| | Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATA--GTGTCCGAGGGTTCGA 39370 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || ||||||| |||||||| || |||||||| Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq116 Length=862150 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||| |||||||| || ||||| | | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||| ||||| || |||| || ||||||||||| || | || Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| |||||| ||||| | ||| || ||||||| ||| | Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATA--GTGTCTGACGGTTCTA 484135 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || |||||||| || || || ||||| Sbjct 484134 CTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||| ||| ||| |||||||| || ||||| | | Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||| ||||| || |||| || ||||||||||| || | || Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| ||||| |||||| ||||| Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAA 483934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| | |||||||| | || |||||| || || || || |||| Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| ||| ||||| ||||| || |||| || ||||| || ||||| | || Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 || |||||||| || ||||| ||||| || | | ||||| | || || Sbjct 481762 GACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAAC 481703 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || || || || |||||||||||||| Sbjct 481702 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 ||||| || || ||||||| ||||| |||||||| | ||| | ||||| || || Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 39631 ATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 ||||| ||||| | ||| || || || | ||| || ||||||||||| |||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATA--GTATCCGATGGTTCAACTTCCAAAGTAATAGTTT 474136 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| |||||||| ||||| ||||| Sbjct 474135 TGCCAGTTAATGTTTTTACAAAGATTTGCAT 474105 >seq2 Length=5618958 Score = 100 bits (110), Expect = 2e-16 Identities = 169/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || || | ||| |||||||| ||||| || || |||||||| ||| Sbjct 3063864 CAATTAT-GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTA 3063922 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| || ||| |||| |||||||| || || | || || ||||| || ||| Sbjct 3063923 TAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGA 3063982 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCT 39660 || | || | ||||||||| || | | |||| | || | || || || ||||| Sbjct 3063983 TCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATA--GTGTCG 3064039 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || ||||||||||| ||||| || || | |||||| ||||| || ||||| Sbjct 3064040 GAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq21 Length=2241434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574 || || |||||||| | ||| ||||| |||||| ||| | || || ||||||| || Sbjct 1381831 TTGCCCAAATCACCGATATGACGTTCATCATCAGTGGGTGCTCCATGCTCTTTATTGCAA 1381772 Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGTATA 42634 ||||||||||| |||| || || || || || || || | || || ||||| || | | Sbjct 1381771 GGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCGAATTCGTGAACA 1381712 Query 42635 TGAAAACCGTG 42645 |||||||| || Sbjct 1381711 TGAAAACCATG 1381701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362292863358