Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq512 163 3e-35
seq32 118 1e-21
seq116 116 4e-21
seq2 107 2e-18
>seq512
Length=181763
Score = 163 bits (180), Expect = 3e-35
Identities = 370/557 (66%), Gaps = 12/557 (2%)
Strand=Plus/Minus
Query 132877 AAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGT 132936
||||| || ||||| || ||||| || || || ||||| || || | || || | |
Sbjct 52677 AAATGTTTAAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATT 52618
Query 132937 TCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996
|| || ||| || || || ||||| | || ||||| || ||||||||||| | |||
Sbjct 52617 TCATTAGAGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCG 52558
Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056
|| ||||| |||||| | || |||||||| |||||||| | | || || || ||
Sbjct 52557 AAGCTGCCACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAA 52498
Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116
| ||| | | ||||| || |||||||| ||||| | || || | |||
Sbjct 52497 TTAGCTGAATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGC 52438
Query 133117 ATCGTTTCGATGGCGTTCAACAAA------CGGAGTTTCTCTTCCGAGGAACGCACGTAG 133170
|| || || || || || || | | || |||||| ||| | | ||
Sbjct 52437 ATTGTCTCAATAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATA------TAT 52384
Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230
|| ||||| || ||||||||||||||| || || |||||||| |||||||| ||
Sbjct 52383 GTTTCGATAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCA 52324
Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290
|||||||| || || || | || || ||||| | || || || || | ||| ||
Sbjct 52323 TAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCA 52264
Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350
|| || || || ||| || || ||||| |||| || || || ||||| || |||
Sbjct 52263 TTAACAATACCATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCG 52204
Query 133351 TTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410
||| | || || | ||| ||| | |||| || || ||||| ||||| || | |||
Sbjct 52203 CCGTCACTTAACCGATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTC 52144
Query 133411 CAAAACGACGCCTCGGC 133427
||||| || || || ||
Sbjct 52143 CAAAAAGAGGCTTCCGC 52127
>seq32
Length=1919080
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || |||||||| || |||||||| |||||||| | || ||||| ||
Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | ||| | |||| || || | ||||||||||||||||| |||||
Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || || | |||| ||| || || || |||| || | ||||| | ||| ||
Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| ||| | || | ||| | |||||||||||| |||| ||
Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193
>seq116
Length=862150
Score = 116 bits (128), Expect = 4e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||||||||| || ||||| | || || ||||| ||||| | || || || | |
Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144
Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | ||||| |||||| |||||||| ||||| || || ||||| | ||||
Sbjct 484145 AGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 484203
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | || ||||||||| |||| || | ||||| | || ||||
Sbjct 484204 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 484263
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| ||||||||| | || || || |||||| |||||
Sbjct 484264 ACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGT 484301
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| || || | || || ||||| |||||| | || || ||| |
Sbjct 481652 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 481711
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | ||||| ||||| | || ||||| ||| | || | ||
Sbjct 481712 TCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 481771
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | || ||||||||| |||| | | ||||| ||| |||||||
Sbjct 481772 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 481831
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || || ||| |||| || |||||||| | |||||| | || |||
Sbjct 481832 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/146 (75%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
||||| |||||| |||||||| ||||| || || ||||| | ||||| ||||| | |
Sbjct 483929 AAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGA 483987
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||||||| |||| || | ||||| | || |||||||| |||||||
Sbjct 483988 TCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGG 484047
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || ||||||||||| |||||
Sbjct 484048 AATCCACATTGCATTTGGTGTTGCGT 484073
>seq2
Length=5618958
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| ||||| || || |||||||| || || | || || ||| |
Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | ||| | || | ||||| | || ||||| || ||||| | ||
Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | ||| ||||| || |||| || | |||||| | ||||||
Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTAT 3063922
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||||| |||| |||| ||||| || |||
Sbjct 3063921 AACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGT 3063883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162008771840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |