Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq512 163 3e-35 seq32 118 1e-21 seq116 116 4e-21 seq2 107 2e-18 >seq512 Length=181763 Score = 163 bits (180), Expect = 3e-35 Identities = 370/557 (66%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 132877 AAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGT 132936 ||||| || ||||| || ||||| || || || ||||| || || | || || | | Sbjct 52677 AAATGTTTAAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATT 52618 Query 132937 TCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 || || ||| || || || ||||| | || ||||| || ||||||||||| | ||| Sbjct 52617 TCATTAGAGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCG 52558 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056 || ||||| |||||| | || |||||||| |||||||| | | || || || || Sbjct 52557 AAGCTGCCACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAA 52498 Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 | ||| | | ||||| || |||||||| ||||| | || || | ||| Sbjct 52497 TTAGCTGAATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGC 52438 Query 133117 ATCGTTTCGATGGCGTTCAACAAA------CGGAGTTTCTCTTCCGAGGAACGCACGTAG 133170 || || || || || || || | | || |||||| ||| | | || Sbjct 52437 ATTGTCTCAATAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATA------TAT 52384 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || ||||| || ||||||||||||||| || || |||||||| |||||||| || Sbjct 52383 GTTTCGATAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCA 52324 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 |||||||| || || || | || || ||||| | || || || || | ||| || Sbjct 52323 TAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCA 52264 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 || || || || ||| || || ||||| |||| || || || ||||| || ||| Sbjct 52263 TTAACAATACCATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCG 52204 Query 133351 TTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 ||| | || || | ||| ||| | |||| || || ||||| ||||| || | ||| Sbjct 52203 CCGTCACTTAACCGATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTC 52144 Query 133411 CAAAACGACGCCTCGGC 133427 ||||| || || || || Sbjct 52143 CAAAAAGAGGCTTCCGC 52127 >seq32 Length=1919080 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | |||| ||| || || || |||| || | ||||| | ||| || Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | || | ||| | |||||||||||| |||| || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq116 Length=862150 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || || ||||| ||||| | || || || | | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| |||||| |||||||| ||||| || || ||||| | |||| Sbjct 484145 AGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 484203 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||||||| |||| || | ||||| | || |||| Sbjct 484204 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 484263 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||||||| | || || || |||||| ||||| Sbjct 484264 ACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGT 484301 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || || ||||| |||||| | || || ||| | Sbjct 481652 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 481711 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | ||||| ||||| | || ||||| ||| | || | || Sbjct 481712 TCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 481771 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || ||||||||| |||| | | ||||| ||| ||||||| Sbjct 481772 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 481831 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || ||| |||| || |||||||| | |||||| | || ||| Sbjct 481832 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||||| |||||| |||||||| ||||| || || ||||| | ||||| ||||| | | Sbjct 483929 AAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGA 483987 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||||||| |||| || | ||||| | || |||||||| ||||||| Sbjct 483988 TCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGG 484047 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || ||||||||||| ||||| Sbjct 484048 AATCCACATTGCATTTGGTGTTGCGT 484073 >seq2 Length=5618958 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || || |||||||| || || | || || ||| | Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | ||| | || | ||||| | || ||||| || ||||| | || Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | ||| ||||| || |||| || | |||||| | |||||| Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTAT 3063922 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||||| |||| |||| ||||| || ||| Sbjct 3063921 AACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGT 3063883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162008771840