Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq162 87.8 2e-12 >seq162 Length=626193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 234/351 (67%), Gaps = 5/351 (1%) Strand=Plus/Minus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||||| | | | || || | ||||| || || |||||||| || | || || | |||| Sbjct 500215 AAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTA 500156 Query 106328 GACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 ||||||| | | |||||| ||| |||| | || || | | ||| || || || Sbjct 500155 GACTTTCTGGTTTCCGGCAACGG-ATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 || | || ||||| | ||| | ||||| | | ||||| | || ||| | | || Sbjct 500096 TGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATAT-TGTTTATCTGT-CGTT 500039 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| || | | || |||||||| ||||||||||| || | || || || Sbjct 500038 -ACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGT 499980 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 || || | ||||||||||||||||| | || || || || | ||||| ||| || Sbjct 499979 ATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATT 499920 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||| || || || ||||| ||||| |||||||| || || || ||||| Sbjct 499919 ACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTC 499869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968071164240