Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq276 122 1e-22 >seq276 Length=329178 Score = 122 bits (134), Expect = 1e-22 Identities = 346/518 (67%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| |||||||| | |||| ||||| || ||||| || | || | || || || Sbjct 61936 TGTGAAATCACAGGTTATGATAAAATATCGTTTCAACCCAATTCCGGTGCTCAAGGCGAA 61877 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCA--TACCATCAAGGATCAGGA-GATGATAAAAGA 159387 ||||| || || ||| || | ||| |||||| | | | | | || | | || Sbjct 61876 TATGCGGGCCTACGAGCTATAC--GCAGTTACCATGA-GCACCGTAAAGAAGGGCATCGA 61820 Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 ||||| ||||| || || || || ||||| || |||||||| || || ||||| Sbjct 61819 AATGTTTGTTTAATTCCCATTTCTGCGCATGGTACGAATCCTGCTTCTGCTCAAATGGCC 61760 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGA-TGATGGCAACATAGACATCAAAGATCT 159506 || |||||||||| | | | | || | | |||||| | ||||||||| | |||| Sbjct 61759 GGCATGAAAGTTGAACCTAT-ACGTATACTTTCTGATGGAAGCATAGACATGGCACATCT 61701 Query 159507 AGAGAAGAAAGCAATCATGAATA--CATTTGAACTGTCATGTATTATGATTACATATCCA 159564 | |||||| || |||| | || | | || |||||| | ||| |||||||||| Sbjct 61700 GCGCGATAAAGCA-TC-TGAACATGCAAGTAATCTTTCATGTGTAATGGTTACATATCCC 61643 Query 159565 TCTACACATGGTGTATTTGAA---ACAAACATCAGACAGATATGTAAGATTGTTCATGAG 159621 || || || || || ||| |||| | |||||| | || | || | ||| Sbjct 61642 TCAACTATGGGAGTTTTCGAAGAGACAATTA-CAGACA--TTTGCGACCTTATACATCGC 61586 Query 159622 AATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAA 159681 |||| || || || ||||| ||||| || ||| | || || || || ||| || Sbjct 61585 CATGGAGGACAAGTGTATCTGGATGGCGCCAATATGAACGCGCAAGTGGGTTTATGTCGT 61526 Query 159682 CCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCA 159741 || | || ||||| ||||| | |||| |||| || ||||||||||| || ||||| Sbjct 61525 CCTGGAGATTATGGAAGTGATGTTTCTCATTTAAATTTGCATAAGACATTTTGCATTCCT 61466 Query 159742 CATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || || ||||| || || ||| | || |||||||| || Sbjct 61465 CACGGCGGTGGCGGACCGGGCATGGGACCTATTGGAGT 61428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588038512795360