Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq116 93.3 3e-14 seq32 82.4 5e-11 >seq116 Length=862150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 |||||||| || | ||| ||||||||||||||| ||||| || || | || ||| Sbjct 481866 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTT 481807 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| |||||| || ||||| || | ||||| || ||| | || || || || || || Sbjct 481806 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCT 481747 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||| || ||| || || || || | || | |||||| || | ||| || | Sbjct 481746 TGAATTTTAGTTTTAAC--ATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAG 481689 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || | |||||||| ||||||||||| || Sbjct 481688 TTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652 >seq32 Length=1919080 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||| ||||| || || | | || |||| |||| || ||||| || || Sbjct 39228 TTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAA 39287 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||||||| | || | ||||| ||||| |||||| ||| || Sbjct 39288 AATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATT 39347 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || || || || | || ||||| || ||||| || || || || Sbjct 39348 TTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTAC 39407 Query 34970 AAAGATCTGCATATT 34984 ||| ||||||||||| Sbjct 39408 AAAAATCTGCATATT 39422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626771129328