Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq162 412 4e-110 seq512 325 4e-84 >seq162 Length=626193 Score = 412 bits (456), Expect = 4e-110 Identities = 1218/1878 (65%), Gaps = 24/1878 (1%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||||| || ||||| |||| || |||| || ||||||||||| Sbjct 500936 TTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACC 500877 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || | |||| ||||| ||||| ||| || |||||| ||||||||| Sbjct 500876 GGTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGG 500817 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | | ||| || |||| ||||| || || || ||||| || || | |||| | || Sbjct 500816 TTGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGC 500757 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | | | | | || ||||| || |||||||| | || ||| ||| Sbjct 500756 CATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCT 500697 Query 47213 TTCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 ||| || | | || | | ||||| || || || | | | | | ||| |||||| | Sbjct 500696 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCAT 500637 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 | || |||||| |||||| || ||| | | |||| |||| || | Sbjct 500636 GTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGAT 500577 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||| || ||||| ||||| | || | | ||||| || ||||| || | ||| || Sbjct 500576 AAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTC 500517 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||| || |||| |||||||||||| || || |||||||| | || |||| ||| ||| Sbjct 500516 ATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATT 500457 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 | |||||||| ||| || | ||||| ||| ||||| | || Sbjct 500456 GCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGG 500397 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 || ||| | |||||||||||| || ||||||| | ||| ||| | |||||| Sbjct 500396 CGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGT 500337 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 || || |||| |||| |||| || | ||||||||| |||| || ||| |||||||| Sbjct 500336 TTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATAT 500277 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 ||||||||| |||| | | |||| || | | |||| | || || Sbjct 500276 TGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCAT 500217 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749 | || || || |||||||| || || | ||||||||| | |||| ||| Sbjct 500216 TAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATT 500157 Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809 ||| | ||| || || ||||| | || ||||| || ||||| || || Sbjct 500156 AGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097 Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATA---AC 47866 ||| |||| | | ||| | ||||||| | | |||| | | || Sbjct 500096 TGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCGTTAC 500037 Query 47867 AAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATA 47926 |||| |||| | || || ||||||| ||| || || |||| || | | ||||| Sbjct 500036 AAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTATA 499977 Query 47927 TTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATT 47986 || | ||||| | ||| | |||| ||||| ||||| || | ||| || |||||| | Sbjct 499976 TTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACT 499917 Query 47987 NNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046 ||||| || || ||||||||||| |||| ||||| || |||| || | | Sbjct 499916 TTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG---C 499860 Query 48047 AATGATAGATTTCCAA--AC-AGTC-CTAGCCTTTATAACAGCTCTAGCTTTATTATCAT 48102 | || | ||| | || || |||| | ||| ||||| | ||||| || | Sbjct 499859 ACTGC-ATATTGCGAACTACTAGTCACGAGCTTTTATTGTTTTGTTCGCTTTGCCCTCGT 499801 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 ||| ||||| | ||||| | ||||||| || ||||| | | | || ||||| | Sbjct 499800 CTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGC 499741 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 ||| || |||||||| | ||||||| ||||||| | ||||| |||| || | || Sbjct 499740 ATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAAAT 499681 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 | || ||||| ||||| ||||||||||| | | ||| || || || ||||| Sbjct 499680 CGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCT 499621 Query 48283 TTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 |||| ||||| ||||| || | ||||| |||||||| || ||||| ||||| || | Sbjct 499620 TTTTCAAGTT-TAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAAA 499562 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | || || ||||| ||| ||||| || | ||| | |||| |||||| | | | | Sbjct 499561 GCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGT 499502 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || |||| ||| | |||| || | | || || || | | | || || ||| Sbjct 499501 AACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCTTGCT 499442 Query 48462 CTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA- 48517 | ||| || | || || | |||||| ||||| ||| ||||| ||| |||||| Sbjct 499441 CGTATGCAATGAATATTT---AGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACAT 499385 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577 || || | |||| ||| || || || || || |||| ||| | | || Sbjct 499384 TGGTCTATAGCCTTCAT-AATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGCA 499326 Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 |||| |||||| | || | | | |||||| ||||| || |||||| |||| Sbjct 499325 GGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAA 499266 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 | ||| || | | ||||| ||||||||| | | || || || | || || Sbjct 499265 GTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAAT 499206 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 || |||| |||||||||||||||| || || | || ||||||||| || || || Sbjct 499205 GCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCTT 499146 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 || | ||| ||| ||| || |||||||| |||||| | || || ||| ||| ||| Sbjct 499145 TAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGATC 499086 Query 48818 ATTAATAATTGATGAATT 48835 | |||||| | ||||| Sbjct 499085 ACAAATAATAGCAGAATT 499068 >seq512 Length=181763 Score = 325 bits (360), Expect = 4e-84 Identities = 504/717 (70%), Gaps = 2/717 (0%) Strand=Plus/Minus Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837 ||||| ||||| | | ||| || ||| ||| |||||| | ||| | || | ||| Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897 || || ||||| | || |||| || ||||| | ||| |||| ||| || || || || Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957 |||| ||| || | || | |||| | | || | || | |||||||||||| Sbjct 52722 TCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATT 52663 Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 || ||||| ||||| |||| || || || | ||||| ||||||||| |||||| Sbjct 52662 AATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTT 52603 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 ||||| ||||| | ||| | ||| |||| ||| ||||| || || || ||| |||| Sbjct 52602 AAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAG 52543 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || |||||||| || || || ||||| | | | ||| ||| || |||| | | | | Sbjct 52542 AAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGC-TGAATGCGA 52484 Query 19138 TGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 ||| |||||| || ||||| || |||||||| || || ||||||||||||| |||| Sbjct 52483 TGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGC 52424 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 |||||||||||| ||| || | ||| | | ||||| || || | |||||| || Sbjct 52423 ATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTATA 52364 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| || || | |||||| || || || ||||| || ||||| || | ||||| || Sbjct 52363 CATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGT 52304 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||| || || || |||||| ||| || ||||| |||||||| || ||||| || Sbjct 52303 TATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGC 52244 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 |||||||| || || |||||| ||||||||| ||| | |||| |||||| Sbjct 52243 CGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCA 52184 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | || |||||||| | || || |||||| | ||||||||||| || || || Sbjct 52183 ATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096672502640