Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq162 412 4e-110
seq512 325 4e-84
>seq162
Length=626193
Score = 412 bits (456), Expect = 4e-110
Identities = 1218/1878 (65%), Gaps = 24/1878 (1%)
Strand=Plus/Minus
Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| || || ||||||| || ||||| |||| || |||| || |||||||||||
Sbjct 500936 TTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACC 500877
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
|| ||||| || | |||| ||||| ||||| ||| || |||||| |||||||||
Sbjct 500876 GGTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGG 500817
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
|| | | ||| || |||| ||||| || || || ||||| || || | |||| | ||
Sbjct 500816 TTGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGC 500757
Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212
||| | | | | | | || ||||| || |||||||| | || ||| |||
Sbjct 500756 CATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCT 500697
Query 47213 TTCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269
||| || | | || | | ||||| || || || | | | | | ||| |||||| |
Sbjct 500696 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCAT 500637
Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329
| || |||||| |||||| || ||| | | |||| |||| || |
Sbjct 500636 GTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGAT 500577
Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389
||| || ||||| ||||| | || | | ||||| || ||||| || | ||| ||
Sbjct 500576 AAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTC 500517
Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449
||| || |||| |||||||||||| || || |||||||| | || |||| ||| |||
Sbjct 500516 ATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATT 500457
Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509
| |||||||| ||| || | ||||| ||| ||||| | ||
Sbjct 500456 GCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGG 500397
Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569
|| ||| | |||||||||||| || ||||||| | ||| ||| | ||||||
Sbjct 500396 CGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGT 500337
Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629
|| || |||| |||| |||| || | ||||||||| |||| || ||| ||||||||
Sbjct 500336 TTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATAT 500277
Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689
||||||||| |||| | | |||| || | | |||| | || ||
Sbjct 500276 TGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCAT 500217
Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749
| || || || |||||||| || || | ||||||||| | |||| |||
Sbjct 500216 TAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATT 500157
Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809
||| | ||| || || ||||| | || ||||| || ||||| || ||
Sbjct 500156 AGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097
Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATA---AC 47866
||| |||| | | ||| | ||||||| | | |||| | | ||
Sbjct 500096 TGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCGTTAC 500037
Query 47867 AAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATA 47926
|||| |||| | || || ||||||| ||| || || |||| || | | |||||
Sbjct 500036 AAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTATA 499977
Query 47927 TTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATT 47986
|| | ||||| | ||| | |||| ||||| ||||| || | ||| || |||||| |
Sbjct 499976 TTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACT 499917
Query 47987 NNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046
||||| || || ||||||||||| |||| ||||| || |||| || | |
Sbjct 499916 TTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG---C 499860
Query 48047 AATGATAGATTTCCAA--AC-AGTC-CTAGCCTTTATAACAGCTCTAGCTTTATTATCAT 48102
| || | ||| | || || |||| | ||| ||||| | ||||| || |
Sbjct 499859 ACTGC-ATATTGCGAACTACTAGTCACGAGCTTTTATTGTTTTGTTCGCTTTGCCCTCGT 499801
Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162
||| ||||| | ||||| | ||||||| || ||||| | | | || ||||| |
Sbjct 499800 CTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGC 499741
Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222
||| || |||||||| | ||||||| ||||||| | ||||| |||| || | ||
Sbjct 499740 ATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAAAT 499681
Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282
| || ||||| ||||| ||||||||||| | | ||| || || || |||||
Sbjct 499680 CGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCT 499621
Query 48283 TTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341
|||| ||||| ||||| || | ||||| |||||||| || ||||| ||||| || |
Sbjct 499620 TTTTCAAGTT-TAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAAA 499562
Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401
| || || ||||| ||| ||||| || | ||| | |||| |||||| | | | |
Sbjct 499561 GCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGT 499502
Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461
||||| || |||| ||| | |||| || | | || || || | | | || || |||
Sbjct 499501 AACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCTTGCT 499442
Query 48462 CTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA- 48517
| ||| || | || || | |||||| ||||| ||| ||||| ||| ||||||
Sbjct 499441 CGTATGCAATGAATATTT---AGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACAT 499385
Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577
|| || | |||| ||| || || || || || |||| ||| | | ||
Sbjct 499384 TGGTCTATAGCCTTCAT-AATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGCA 499326
Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637
|||| |||||| | || | | | |||||| ||||| || |||||| ||||
Sbjct 499325 GGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAA 499266
Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697
| ||| || | | ||||| ||||||||| | | || || || | || ||
Sbjct 499265 GTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAAT 499206
Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757
|| |||| |||||||||||||||| || || | || ||||||||| || || ||
Sbjct 499205 GCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCTT 499146
Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
|| | ||| ||| ||| || |||||||| |||||| | || || ||| ||| |||
Sbjct 499145 TAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGATC 499086
Query 48818 ATTAATAATTGATGAATT 48835
| |||||| | |||||
Sbjct 499085 ACAAATAATAGCAGAATT 499068
>seq512
Length=181763
Score = 325 bits (360), Expect = 4e-84
Identities = 504/717 (70%), Gaps = 2/717 (0%)
Strand=Plus/Minus
Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837
||||| ||||| | | ||| || ||| ||| |||||| | ||| | || | |||
Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783
Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897
|| || ||||| | || |||| || ||||| | ||| |||| ||| || || || ||
Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723
Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957
|||| ||| || | || | |||| | | || | || | ||||||||||||
Sbjct 52722 TCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATT 52663
Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017
|| ||||| ||||| |||| || || || | ||||| ||||||||| ||||||
Sbjct 52662 AATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTT 52603
Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077
||||| ||||| | ||| | ||| |||| ||| ||||| || || || ||| ||||
Sbjct 52602 AAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAG 52543
Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137
|| |||||||| || || || ||||| | | | ||| ||| || |||| | | | |
Sbjct 52542 AAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGC-TGAATGCGA 52484
Query 19138 TGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196
||| |||||| || ||||| || |||||||| || || ||||||||||||| ||||
Sbjct 52483 TGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGC 52424
Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256
|||||||||||| ||| || | ||| | | ||||| || || | |||||| ||
Sbjct 52423 ATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTATA 52364
Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316
|||||| || || | |||||| || || || ||||| || ||||| || | ||||| ||
Sbjct 52363 CATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGT 52304
Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376
||| || || || |||||| ||| || ||||| |||||||| || ||||| ||
Sbjct 52303 TATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGC 52244
Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436
|||||||| || || |||||| ||||||||| ||| | |||| ||||||
Sbjct 52243 CGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCA 52184
Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||| | || |||||||| | || || |||||| | ||||||||||| || || ||
Sbjct 52183 ATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562096672502640
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