Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq512 297 2e-75 seq109 98.7 1e-15 seq455 82.4 9e-11 >seq512 Length=181763 Score = 297 bits (328), Expect = 2e-75 Identities = 482/691 (70%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| |||||| ||||||| ||||||||||| ||| ||| || ||||||| | || Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 52766 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | || ||| | ||| |||||| ||| | || |||||| | | ||| | | Sbjct 52765 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCAA 52706 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 ||| ||||| | | || | | |||||| |||||||| ||| ||||| ||||| Sbjct 52705 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCACA 52646 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 ||||| |||||||| | ||||| ||||||||| || ||||| |||||||||| || Sbjct 52645 GTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 52586 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| || | ||||||||| | ||| || ||| ||||||||||||||| || || Sbjct 52585 ACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACGGC 52526 Query 37310 TGCAAATGCTACAAGACGTGTACCGAA---AGTTGAACTATAATCAGAAATCCAtttttt 37366 || || |||| | |||| ||| || || |||| | || || |||||| | Sbjct 52525 AGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAA-TGCGAT--GATATCCATGCTAG 52469 Query 37367 tGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtt 37426 | ||| || ||||| ||||| || ||||| ||||| || || || ||| | | Sbjct 52468 AGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGATATTC 52409 Query 37427 tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAAT 37486 ||||| ||| | ||||| || || || ||||||||||||||||| ||||| | Sbjct 52408 ACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGCAC 52349 Query 37487 ATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTT 37546 |||||| || || || |||||||||||||| || | |||||||| || |||||| || | Sbjct 52348 ATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTG 52289 Query 37547 AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAG 37606 |||| | | |||| || |||||||| || ||||| || ||||| ||||| | Sbjct 52288 GGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAA 52229 Query 37607 AACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTT 37666 |||| | |||||||| | ||| | | ||| |||||||| | || ||||| Sbjct 52228 GACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTT 52169 Query 37667 TGATAAATCAACTTCATCAACGGTCCAAAAA 37697 || | ||||| || ||| | ||||||||| Sbjct 52168 AGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138 >seq109 Length=951561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 940987 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATTTGGGAAGTGC 940928 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 940927 AAATATGGACTGGAGGTCTTTGACTCAAGTCAAAGAGTTAGG 940886 >seq455 Length=160846 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| | ||| || |||||||| ||| | ||| |||||||||| Sbjct 144029 AGGAGTCTTACATACAAAATTATAGATTGTAGATAATAAGCATTTTTATGTAGGAAGTGC 143970 Query 153347 TAATATGGATTGGAGATC 153364 |||||||| ||||| || Sbjct 143969 GAATATGGACTGGAGGTC 143952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304020765040