Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_017985.1
Length=40128
Score E
Sequences producing significant alignments: (Bits) Value
seq347 354 2e-93
>seq347
Length=3601
Score = 354 bits (392), Expect = 2e-93
Identities = 621/900 (69%), Gaps = 8/900 (1%)
Strand=Plus/Minus
Query 1482 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1541
||| |||| | | ||| ||||| || || |||| ||||||||||| || || | ||
Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807
Query 1542 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1601
|| || || ||||| || ||||| | || |||| | || | | || || || ||
Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747
Query 1602 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1661
|| || || ||||||| |||||| |||| |||||||| || || || || ||
Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687
Query 1662 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 1721
| || | | || || || || ||||| || | | || | ||||| |||||
Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627
Query 1722 GTTATTCCTTCCAGCGCCAGATTCCATAATTTCCAGCCATTGAATTT--TGAATCGCCGG 1779
||||| ||||| || || | ||||||||||||||| | | | || || | ||| |||
Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGCTTGATC--CGG 2569
Query 1780 CAACACGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCA 1839
| || || ||||| | ||| |||| | || |||||||| | ||| ||||
Sbjct 2568 CTGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCA 2509
Query 1840 CACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGC 1899
||| ||||| || | ||| ||||| |||| | || || || || || ||||
Sbjct 2508 AACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTG 2449
Query 1900 TCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCA 1959
|| || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| |
Sbjct 2448 ATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTA 2389
Query 1960 GCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGC 2019
| | |||||||| || || || || ||||| || |||||||||| | ||||| ||
Sbjct 2388 GTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGC 2329
Query 2020 GCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTT 2079
| |||||||| || | ||| || || || ||||||||||||| | || || || | |
Sbjct 2328 GTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATAT 2269
Query 2080 CTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGA 2139
|| |||||| | |||||| |||||||| | || | ||||| || || ||||| || |
Sbjct 2268 TTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTA 2209
Query 2140 GACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAAC 2197
|| |||||||| |||||||||||||| |||||||| ||||| || ||| ||||
Sbjct 2208 ATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAAC 2151
Query 2198 GAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTGCTTCCGTC 2257
| ||||||||| ||| | ||||| | ||||| ||| | || || ||
Sbjct 2150 CATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATC 2091
Query 2258 GTTGATGAAAACAATCTCAACTTCATACGGTTTTAACTCTTCAAACTCGCGAACCGTTTT 2317
|| ||||| || | ||| | | ||| | |||| |||| ||| || | |||| |||
Sbjct 2090 ATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTT 2031
Query 2318 ATAGAAAATAGGTATCGTGGCTTCTTCATTGAAGACCGGAACGACTAACGAGATTTTCAT 2377
||| ||||| ||||| | ||||||||| || || || || |||||||| || |||||
Sbjct 2030 ATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128285370577080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |