Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq347 354 2e-93 >seq347 Length=3601 Score = 354 bits (392), Expect = 2e-93 Identities = 621/900 (69%), Gaps = 8/900 (1%) Strand=Plus/Minus Query 1482 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1541 ||| |||| | | ||| ||||| || || |||| ||||||||||| || || | || Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807 Query 1542 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1601 || || || ||||| || ||||| | || |||| | || | | || || || || Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747 Query 1602 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1661 || || || ||||||| |||||| |||| |||||||| || || || || || Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687 Query 1662 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 1721 | || | | || || || || ||||| || | | || | ||||| ||||| Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627 Query 1722 GTTATTCCTTCCAGCGCCAGATTCCATAATTTCCAGCCATTGAATTT--TGAATCGCCGG 1779 ||||| ||||| || || | ||||||||||||||| | | | || || | ||| ||| Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGCTTGATC--CGG 2569 Query 1780 CAACACGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCA 1839 | || || ||||| | ||| |||| | || |||||||| | ||| |||| Sbjct 2568 CTGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCA 2509 Query 1840 CACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGC 1899 ||| ||||| || | ||| ||||| |||| | || || || || || |||| Sbjct 2508 AACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTG 2449 Query 1900 TCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCA 1959 || || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| | Sbjct 2448 ATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTA 2389 Query 1960 GCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGC 2019 | | |||||||| || || || || ||||| || |||||||||| | ||||| || Sbjct 2388 GTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGC 2329 Query 2020 GCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTT 2079 | |||||||| || | ||| || || || ||||||||||||| | || || || | | Sbjct 2328 GTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATAT 2269 Query 2080 CTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGA 2139 || |||||| | |||||| |||||||| | || | ||||| || || ||||| || | Sbjct 2268 TTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTA 2209 Query 2140 GACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAAC 2197 || |||||||| |||||||||||||| |||||||| ||||| || ||| |||| Sbjct 2208 ATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAAC 2151 Query 2198 GAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTGCTTCCGTC 2257 | ||||||||| ||| | ||||| | ||||| ||| | || || || Sbjct 2150 CATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATC 2091 Query 2258 GTTGATGAAAACAATCTCAACTTCATACGGTTTTAACTCTTCAAACTCGCGAACCGTTTT 2317 || ||||| || | ||| | | ||| | |||| |||| ||| || | |||| ||| Sbjct 2090 ATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTT 2031 Query 2318 ATAGAAAATAGGTATCGTGGCTTCTTCATTGAAGACCGGAACGACTAACGAGATTTTCAT 2377 ||| ||||| ||||| | ||||||||| || || || || |||||||| || ||||| Sbjct 2030 ATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128285370577080