Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq298 179 1e-40
>seq298
Length=289783
Score = 179 bits (198), Expect = 1e-40
Identities = 348/510 (68%), Gaps = 4/510 (1%)
Strand=Plus/Plus
Query 1135 GGTGCTGGCCGGGAAATACCGGATCGCTGAGTTCTCAGACGAACTATGGAAAGAGGCCGA 1194
|||| | |||| || |||||| | | ||| | ||||| || ||| | |||| ||
Sbjct 270344 GGTGTTTTCCGGCAAGTACCGGGTGGAGTCCTTCGCTGACGACCTGTGGCAGCAGGCTGA 270403
Query 1195 TCGCCTGTTCTTCGGAGCTGACTTCGGTTTCGCTAAAGACCCCAACACGCTAGTTCGCTC 1254
|| |||| ||||| || ||||| || ||||| || || |||| |||||| | |||
Sbjct 270404 CCGGTTGTTTTTCGGTGCGGACTTTGGCTTCGCCAACGATCCCAGCACGCTGATACGCAG 270463
Query 1255 GTTCATCCT-GCAC-AACCGGCTGTACATCGAATACGAGGCATACGGTCAGCAGACAGAG 1312
|| ||||| | || |||| || |||||||| | || ||||| | ||
Sbjct 270464 TTTTATCCTTGGACGAACC--CTTTACATCGAGCATGAACAGTACGGCGTGGGCGTTGAA 270521
Query 1313 CTAGACCACATGCCTGAGCTATATGACACGATTCCCGGTTCGCGTGACTGGCCCATCAAG 1372
|| |||||| |||| | | | || |||| | | |||||| | ||||||||||| || ||
Sbjct 270522 CTCGACCACCTGCCGGCGTTTTACGACAAGGTACCCGGTGCCCGTGACTGGCCGATTAAA 270581
Query 1373 GCCGACTCCGCTCGACCTGAGACAATCAGCTATCTCAAACGGCAGGGTTTCAACATCTCC 1432
| |||| | ||||| ||||| |||||||| || | |||||||| || ||| |
Sbjct 270582 GGCGACAACAGCCGACCGGAGACCATCAGCTACCTTGAGCGGCAGGGATTTCGTATCAGC 270641
Query 1433 GCCGCCGAGAAATGGCAGGGGAGCGTTGAGGACGGAATCGCCCACCTTCGCGGCTTCGAC 1492
|| |||| ||||||| ||| ||||| |||||||| || ||| |||| || || |||||
Sbjct 270642 GCGGCCGCCAAATGGCCGGGCAGCGTCGAGGACGGGATTGCCTACCTGCGGGGGTTCGAG 270701
Query 1493 GAAATCATTATCCATCCACGCTGTAAGAATGTGGCACGCGAGGCCCGCATGTGGTCGTAC 1552
| ||| |||| |||| || ||| | || | || || || || ||| ||||||
Sbjct 270702 CATATCGTTATTCATCGTCGTTGTGCGCATACCGTACAGGAAGCGCGGCTGTATTCGTAC 270761
Query 1553 AAAACGGACCGCATCACCGGTGAGGTGTTGCCGAAACTGGCTGACGGGGATGAGCATACC 1612
|| ||||| ||| ||||||||||||| ||| || | | ||| |
Sbjct 270762 AAGGTCGACCGGCAAACCCATGAGGTGTTGCCGGTGTTGGTGGATAAACACAACCATTGC 270821
Query 1613 TGGGACGCAGTCCGCTATTCCCTTGATGGA 1642
|||||||| ||||||| || || ||||||
Sbjct 270822 TGGGACGCCATCCGCTACTCACTGGATGGA 270851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157046381072136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |