Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq298 179 1e-40 >seq298 Length=289783 Score = 179 bits (198), Expect = 1e-40 Identities = 348/510 (68%), Gaps = 4/510 (1%) Strand=Plus/Plus Query 1135 GGTGCTGGCCGGGAAATACCGGATCGCTGAGTTCTCAGACGAACTATGGAAAGAGGCCGA 1194 |||| | |||| || |||||| | | ||| | ||||| || ||| | |||| || Sbjct 270344 GGTGTTTTCCGGCAAGTACCGGGTGGAGTCCTTCGCTGACGACCTGTGGCAGCAGGCTGA 270403 Query 1195 TCGCCTGTTCTTCGGAGCTGACTTCGGTTTCGCTAAAGACCCCAACACGCTAGTTCGCTC 1254 || |||| ||||| || ||||| || ||||| || || |||| |||||| | ||| Sbjct 270404 CCGGTTGTTTTTCGGTGCGGACTTTGGCTTCGCCAACGATCCCAGCACGCTGATACGCAG 270463 Query 1255 GTTCATCCT-GCAC-AACCGGCTGTACATCGAATACGAGGCATACGGTCAGCAGACAGAG 1312 || ||||| | || |||| || |||||||| | || ||||| | || Sbjct 270464 TTTTATCCTTGGACGAACC--CTTTACATCGAGCATGAACAGTACGGCGTGGGCGTTGAA 270521 Query 1313 CTAGACCACATGCCTGAGCTATATGACACGATTCCCGGTTCGCGTGACTGGCCCATCAAG 1372 || |||||| |||| | | | || |||| | | |||||| | ||||||||||| || || Sbjct 270522 CTCGACCACCTGCCGGCGTTTTACGACAAGGTACCCGGTGCCCGTGACTGGCCGATTAAA 270581 Query 1373 GCCGACTCCGCTCGACCTGAGACAATCAGCTATCTCAAACGGCAGGGTTTCAACATCTCC 1432 | |||| | ||||| ||||| |||||||| || | |||||||| || ||| | Sbjct 270582 GGCGACAACAGCCGACCGGAGACCATCAGCTACCTTGAGCGGCAGGGATTTCGTATCAGC 270641 Query 1433 GCCGCCGAGAAATGGCAGGGGAGCGTTGAGGACGGAATCGCCCACCTTCGCGGCTTCGAC 1492 || |||| ||||||| ||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 270642 GCGGCCGCCAAATGGCCGGGCAGCGTCGAGGACGGGATTGCCTACCTGCGGGGGTTCGAG 270701 Query 1493 GAAATCATTATCCATCCACGCTGTAAGAATGTGGCACGCGAGGCCCGCATGTGGTCGTAC 1552 | ||| |||| |||| || ||| | || | || || || || ||| |||||| Sbjct 270702 CATATCGTTATTCATCGTCGTTGTGCGCATACCGTACAGGAAGCGCGGCTGTATTCGTAC 270761 Query 1553 AAAACGGACCGCATCACCGGTGAGGTGTTGCCGAAACTGGCTGACGGGGATGAGCATACC 1612 || ||||| ||| ||||||||||||| ||| || | | ||| | Sbjct 270762 AAGGTCGACCGGCAAACCCATGAGGTGTTGCCGGTGTTGGTGGATAAACACAACCATTGC 270821 Query 1613 TGGGACGCAGTCCGCTATTCCCTTGATGGA 1642 |||||||| ||||||| || || |||||| Sbjct 270822 TGGGACGCCATCCGCTACTCACTGGATGGA 270851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157046381072136