Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq116 179 3e-40 seq32 172 4e-38 seq2 147 2e-30 seq36 86.0 5e-12 >seq116 Length=862150 Score = 179 bits (198), Expect = 3e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || ||||| |||||||| |||||||| |||||||| | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||| || || || ||||| ||||||||||| || || || ||| Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || |||||| ||| || |||| | |||||| |||| ||| ||| Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| ||||| |||||||| |||||||| ||||| Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 150 bits (166), Expect = 1e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||||||| ||||| || || |||||||| || || ||||| |||| || || | | Sbjct 481872 AAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 481813 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 ||| ||||| || || || ||||| |||||||| |||||||| || || | |||||| Sbjct 481812 CCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCT 481753 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | |||||| || | || || || | ||| Sbjct 481752 TTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTG 481693 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || || || || || |||||||| Sbjct 481692 ATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 Score = 134 bits (148), Expect = 1e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||||||| Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||| | ||| || || | ||| ||||| | ||| | |||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||||||||| || ||||| Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCAT 474105 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || ||||| |||||||| |||||||| | Sbjct 484086 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG 484027 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| ||||| || || || ||||| ||||||||||| || || || | Sbjct 484026 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 483967 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || |||||| ||| || |||| | ||| || || | ||| | Sbjct 483966 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAA 483907 Query 101421 CTTC 101424 | || Sbjct 483906 CCTC 483903 >seq32 Length=1919080 Score = 172 bits (190), Expect = 4e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| ||||| | || | ||| | ||| ||||||||||| ||||| ||||||| Sbjct 39192 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 39251 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | |||| ||||||||||| || || || ||||| || || || ||||| || Sbjct 39252 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 39311 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| || Sbjct 39312 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 39371 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq2 Length=5618958 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || |||||||| || || |||| | || | |||| ||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || ||||||||||| |||||||| || ||||||||||||||||| ||| Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | |||||| || | || ||||| | ||| | |||||| Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| || || || ||||| Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq36 Length=1779304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/147 (75%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 13756 ACCGGCATAACCGTTGGGATCGCGT-CCATCCAAACTGTATTTGTCGTTGAAATATATGG 13814 |||| ||||||| |||||||| ||| ||||||||||||||| | || || | | || | Sbjct 1521641 ACCGACATAACCATTGGGATC-CGTGCCATCCAAACTGTATCTATCATTTAGAAGTA--G 1521697 Query 13815 CGTTGATT--AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATA 13872 || || ||||| || ||| ||||||||||||| || |||||||||||||| Sbjct 1521698 CGAAATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATA 1521757 Query 13873 TATTCTCATATATCCGTGCATTTTGCC 13899 || | || | | ||||||||||| || Sbjct 1521758 CATACGCAAAAAGCCGTGCATTTTACC 1521784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270064036182