Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq116 179 3e-40
seq32 172 4e-38
seq2 147 2e-30
seq36 86.0 5e-12
>seq116
Length=862150
Score = 179 bits (198), Expect = 3e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| || || || ||||| |||||||| |||||||| |||||||| |
Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | |||| ||||| || || || ||||| ||||||||||| || || || |||
Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || || |||||| ||| || |||| | |||||| |||| ||| |||
Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||||| |||||| ||||| |||||||| |||||||| |||||
Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 150 bits (166), Expect = 1e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||||||||| ||||| || || |||||||| || || ||||| |||| || || | |
Sbjct 481872 AAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 481813
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
||| ||||| || || || ||||| |||||||| |||||||| || || | ||||||
Sbjct 481812 CCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCT 481753
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|||||||||||||| ||| ||| | || | |||||| || | || || || | |||
Sbjct 481752 TTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTG 481693
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || || || || || || ||||||||
Sbjct 481692 ATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655
Score = 134 bits (148), Expect = 1e-26
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || ||||| |||||||| || ||||| || ||||| ||||| |||||||||
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||| ||| |||| | ||| || || | ||| ||||| | ||| | ||||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||||||||| || |||||
Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCAT 474105
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | | ||| || || ||||| | || ||||| |||||||| |||||||| |
Sbjct 484086 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG 484027
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || | | |||| ||||| || || || ||||| ||||||||||| || || || |
Sbjct 484026 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 483967
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||| ||||| || || || |||||| ||| || |||| | ||| || || | ||| |
Sbjct 483966 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAA 483907
Query 101421 CTTC 101424
| ||
Sbjct 483906 CCTC 483903
>seq32
Length=1919080
Score = 172 bits (190), Expect = 4e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301
||| |||| ||||| | || | ||| | ||| ||||||||||| ||||| |||||||
Sbjct 39192 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 39251
Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361
| || | | |||| ||||||||||| || || || ||||| || || || ||||| ||
Sbjct 39252 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 39311
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| ||
Sbjct 39312 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 39371
Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||||| || ||||| |||| ||||||||||| ||||||||
Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
>seq2
Length=5618958
Score = 147 bits (162), Expect = 2e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || | ||| || || |||||||| || || |||| | || | |||| |||
Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || || ||||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || ||| |||| | |||||| || | || ||||| | ||| | ||||||
Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | |||||| || || || |||||
Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098
>seq36
Length=1779304
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/147 (75%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 13756 ACCGGCATAACCGTTGGGATCGCGT-CCATCCAAACTGTATTTGTCGTTGAAATATATGG 13814
|||| ||||||| |||||||| ||| ||||||||||||||| | || || | | || |
Sbjct 1521641 ACCGACATAACCATTGGGATC-CGTGCCATCCAAACTGTATCTATCATTTAGAAGTA--G 1521697
Query 13815 CGTTGATT--AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATA 13872
|| || ||||| || ||| ||||||||||||| || ||||||||||||||
Sbjct 1521698 CGAAATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATA 1521757
Query 13873 TATTCTCATATATCCGTGCATTTTGCC 13899
|| | || | | ||||||||||| ||
Sbjct 1521758 CATACGCAAAAAGCCGTGCATTTTACC 1521784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396270064036182
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |