Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq170 230 9e-56 seq985 109 2e-19 >seq170 Length=159274 Score = 230 bits (254), Expect = 9e-56 Identities = 442/647 (68%), Gaps = 6/647 (1%) Strand=Plus/Plus Query 19188 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 19247 ||||| || ||||||||| || | |||| | ||||| | || |||||| || || Sbjct 158509 ATGCGTGTCATGTTTGTCGCCCCATTCACCGTGCTGCTTGATCAAACAGCGACGCGCTTT 158568 Query 19248 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 19307 || ||||| ||||| || |||||||| | ||| || ||||| || || || Sbjct 158569 GTTGAGTACGGCTTGCCTGCTGATGAAATCAGCTATGTGTGACGTGACCATCCATTGCAT 158628 Query 19308 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 19367 |||||| |||||| |||||||||||||||||||||||||| ||||| |||| || Sbjct 158629 GACCCGGATAAACTGATCCAGATTGCCAGTGCCGACACGCTGATACGTCGGCAGTTCCCG 158688 Query 19368 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 19427 | ||| || ||| || |||| | || ||||| || ||| || | || || Sbjct 158689 GGCAATATTGATTTGTTGATTGTTGACGAAGCCCATATGCGCCGCAAAAAACTGCTGGAA 158748 Query 19428 GTTATCCGGGACAAAGATATCAGGGTTCTTGGGCTTTCCGGCACCCCGTTCGCAGCCTGG 19487 | |||||||| | ||||||||||| | ||||| || || || | ||||||| | ||| Sbjct 158749 ATCATCCGGGATACTGATATCAGGGTGGTGGGGCTATCGGGTACGCTGTTCGCATCATGG 158808 Query 19488 ATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGT 19547 ||||| || |||||||| || || || ||||| || || || || || || | | Sbjct 158809 ATGGGAAAATACTACGAGAAGCTCATTAAACCTACCACAATGCGCGAGCTGATAAGACTT 158868 Query 19548 GGTGATCTGAGCGATTATGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAA- 19606 || ||| | ||| |||||||| | || || ||| ||| || |||| || Sbjct 158869 GGGGATTTAAGCCCGTATGAGTTCTACGCACCTGATCGGCCCGATGTGAGCAGCGTCAAG 158928 Query 19607 --AACCAGTAACACCGTATTTGGACGGGATTACAACGAGGAACAGCTCGCATCCATCATG 19664 | ||| | | | | ||| | ||| ||||||||||| || || || ||||||| Sbjct 158929 ACATCCAATCTGGCTGCCTATGGGCAGGACTACAACGAGGAGCAACTGGCTGTCATCATG 158988 Query 19665 GG-GAGTTCGGATCTGGTTGGCGATATCGTCAGCAACTGGCTTGAGAATGGCGAGGATTT 19723 || || | | ||||| || | || || |||||||||| || || ||||| || Sbjct 158989 GGAGACGCCACGT-TGGTT-GCAACATTGTACGCAACTGGCTGGAAAACGGCGAAGACAG 159046 Query 19724 ACCGACGATCTGCTTCTGCGTGAATGTGGCTCATGCGAACTTTGTTACCCGTGAGTTTTT 19783 ||| ||| ||||||| ||||| || || |||||| |||| ||| || || ||||| | Sbjct 159047 ACCAACGGTCTGCTTTTGCGTCAACGTCAGTCATGCTAACTATGTCACACGACAGTTTAT 159106 Query 19784 ACAGTCTGGCATTGGCGCAGAGGTGATGACGGCAGATACCCCCCATG 19830 | | | ||| | || || ||||||||||| || ||||| |||| Sbjct 159107 AAAATTCGGCGTCAATGCTGAAGTGATGACGGCTGACACCCCACATG 159153 >seq985 Length=1952 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 23592 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 23651 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811 Query 23652 CCAGCAAGGGCCA 23664 ||||||||||||| Sbjct 1812 CCAGCAAGGGCCA 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194735208576672