Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_018846.1
Length=60894
Score E
Sequences producing significant alignments: (Bits) Value
seq170 230 9e-56
seq985 109 2e-19
>seq170
Length=159274
Score = 230 bits (254), Expect = 9e-56
Identities = 442/647 (68%), Gaps = 6/647 (1%)
Strand=Plus/Plus
Query 19188 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 19247
||||| || ||||||||| || | |||| | ||||| | || |||||| || ||
Sbjct 158509 ATGCGTGTCATGTTTGTCGCCCCATTCACCGTGCTGCTTGATCAAACAGCGACGCGCTTT 158568
Query 19248 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 19307
|| ||||| ||||| || |||||||| | ||| || ||||| || || ||
Sbjct 158569 GTTGAGTACGGCTTGCCTGCTGATGAAATCAGCTATGTGTGACGTGACCATCCATTGCAT 158628
Query 19308 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 19367
|||||| |||||| |||||||||||||||||||||||||| ||||| |||| ||
Sbjct 158629 GACCCGGATAAACTGATCCAGATTGCCAGTGCCGACACGCTGATACGTCGGCAGTTCCCG 158688
Query 19368 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 19427
| ||| || ||| || |||| | || ||||| || ||| || | || ||
Sbjct 158689 GGCAATATTGATTTGTTGATTGTTGACGAAGCCCATATGCGCCGCAAAAAACTGCTGGAA 158748
Query 19428 GTTATCCGGGACAAAGATATCAGGGTTCTTGGGCTTTCCGGCACCCCGTTCGCAGCCTGG 19487
| |||||||| | ||||||||||| | ||||| || || || | ||||||| | |||
Sbjct 158749 ATCATCCGGGATACTGATATCAGGGTGGTGGGGCTATCGGGTACGCTGTTCGCATCATGG 158808
Query 19488 ATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGT 19547
||||| || |||||||| || || || ||||| || || || || || || | |
Sbjct 158809 ATGGGAAAATACTACGAGAAGCTCATTAAACCTACCACAATGCGCGAGCTGATAAGACTT 158868
Query 19548 GGTGATCTGAGCGATTATGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAA- 19606
|| ||| | ||| |||||||| | || || ||| ||| || |||| ||
Sbjct 158869 GGGGATTTAAGCCCGTATGAGTTCTACGCACCTGATCGGCCCGATGTGAGCAGCGTCAAG 158928
Query 19607 --AACCAGTAACACCGTATTTGGACGGGATTACAACGAGGAACAGCTCGCATCCATCATG 19664
| ||| | | | | ||| | ||| ||||||||||| || || || |||||||
Sbjct 158929 ACATCCAATCTGGCTGCCTATGGGCAGGACTACAACGAGGAGCAACTGGCTGTCATCATG 158988
Query 19665 GG-GAGTTCGGATCTGGTTGGCGATATCGTCAGCAACTGGCTTGAGAATGGCGAGGATTT 19723
|| || | | ||||| || | || || |||||||||| || || ||||| ||
Sbjct 158989 GGAGACGCCACGT-TGGTT-GCAACATTGTACGCAACTGGCTGGAAAACGGCGAAGACAG 159046
Query 19724 ACCGACGATCTGCTTCTGCGTGAATGTGGCTCATGCGAACTTTGTTACCCGTGAGTTTTT 19783
||| ||| ||||||| ||||| || || |||||| |||| ||| || || ||||| |
Sbjct 159047 ACCAACGGTCTGCTTTTGCGTCAACGTCAGTCATGCTAACTATGTCACACGACAGTTTAT 159106
Query 19784 ACAGTCTGGCATTGGCGCAGAGGTGATGACGGCAGATACCCCCCATG 19830
| | | ||| | || || ||||||||||| || ||||| ||||
Sbjct 159107 AAAATTCGGCGTCAATGCTGAAGTGATGACGGCTGACACCCCACATG 159153
>seq985
Length=1952
Score = 109 bits (120), Expect = 2e-19
Identities = 68/73 (93%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 23592 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 23651
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811
Query 23652 CCAGCAAGGGCCA 23664
|||||||||||||
Sbjct 1812 CCAGCAAGGGCCA 1824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194735208576672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |