Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq116 114 1e-20
seq32 104 2e-17
seq40 100 2e-16
>seq116
Length=862150
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || || ||||| || ||||||||||| | | ||
Sbjct 484303 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484244
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || || ||||| |||| ||||| || || | |||| || |||
Sbjct 484243 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 484184
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || ||| ||| || | | || ||||||| || || |||| ||
Sbjct 484183 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTG 484124
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||||||| ||||||||||| ||||| || |||||
Sbjct 484123 ATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
>seq32
Length=1919080
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| ||| | ||||| ||| |||||||||||||| ||||| || | | || |
Sbjct 39205 CGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA 39264
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| ||||| ||||| || || || |||| ||| || || || | |||| ||||| |||
Sbjct 39265 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTG 39324
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| |||||| ||||||| | | || || || | || ||||| | || ||
Sbjct 39325 TCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 39384
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| | ||||||||||||||||||||
Sbjct 39385 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
>seq40
Length=1701721
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126
||||| || || | || ||||| ||||| ||||| | ||| || || || ||||
Sbjct 133665 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCACCACGCTTAACATCAAAA 133724
Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186
|| ||||||||||||||| || | || |||| || || | |||||| ||||| |||
Sbjct 133725 TCAACGTCGGAATGATTGAAAAGAAGAACACCCAAATTGCCTCGGTAATCTTCATCAATC 133784
Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246
|||||||| ||||| |||||||| | ||| || | || || || || || | |||
Sbjct 133785 ACACCAGCTCCCACATCGATGAAATTCTTCCAAGCCAAGCCGGATCGTGGTGCTACGCGA 133844
Query 9247 CCGTA 9251
|||||
Sbjct 133845 CCGTA 133849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380929586739498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |