Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq116 114 1e-20 seq32 104 2e-17 seq40 100 2e-16 >seq116 Length=862150 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || ||||| || ||||||||||| | | || Sbjct 484303 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484244 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| |||| ||||| || || | |||| || ||| Sbjct 484243 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 484184 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || ||||||| || || |||| || Sbjct 484183 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTG 484124 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| ||||||||||| ||||| || ||||| Sbjct 484123 ATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 >seq32 Length=1919080 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||| | ||||| ||| |||||||||||||| ||||| || | | || | Sbjct 39205 CGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA 39264 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || || || |||| ||| || || || | |||| ||||| ||| Sbjct 39265 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTG 39324 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||||||| | | || || || | || ||||| | || || Sbjct 39325 TCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 39384 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 39385 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq40 Length=1701721 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || || | || ||||| ||||| ||||| | ||| || || || |||| Sbjct 133665 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCACCACGCTTAACATCAAAA 133724 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || ||||||||||||||| || | || |||| || || | |||||| ||||| ||| Sbjct 133725 TCAACGTCGGAATGATTGAAAAGAAGAACACCCAAATTGCCTCGGTAATCTTCATCAATC 133784 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 |||||||| ||||| |||||||| | ||| || | || || || || || | ||| Sbjct 133785 ACACCAGCTCCCACATCGATGAAATTCTTCCAAGCCAAGCCGGATCGTGGTGCTACGCGA 133844 Query 9247 CCGTA 9251 ||||| Sbjct 133845 CCGTA 133849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929586739498