Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq347 264 3e-66 >seq347 Length=3601 Score = 264 bits (292), Expect = 3e-66 Identities = 588/878 (67%), Gaps = 6/878 (1%) Strand=Plus/Minus Query 6050 TCAGTGTAAATTCTTCCAATATATTCCCCCAGGACACCTATCCCTATAAGCTGGACGCCG 6109 ||| | || |||| |||||||||||| ||||| || || || || || | || || || Sbjct 2845 TCAATATATATTCGTCCAATATATTCACCCAGCACCCCGATACCGATTAATTGCACTCCA 2786 Query 6110 CCAAGGAAAAGGATAGAAACCAGAAGGGATGGATATCCGCGAACCGGGTTGCCAAAGGCA 6169 |||| || || || | |||| | |||||||| || | || ||||| ||||| Sbjct 2785 CCAATAAATAGAATGGCTACCATCAATGATGGATAACCTGGGACTGGGTTACCAAATAGT 2726 Query 6170 AGCGTGTCGACAATCATCCACGCTCCATAGAGAAATGACAGCCCGGCCACTAACAACCCA 6229 | |||| || ||||||| ||||| ||||| || || || || || || Sbjct 2725 AATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAAAGTGAAGCGACACCAAAACCG 2666 Query 6230 ATGTACGTCCACATTCTCAGAGGAAAGGTCGAGAAGCTGGTAATACCCTCAAGCGCGAGA 6289 || |||||||||||||| | ||| | || || || || || || ||||| || | | Sbjct 2665 ATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGATGTTATCCCTTCAAGAGCTAAA 2606 Query 6290 TTCCAGAGTTTCCACCCGTTAAATTTGGTGCTTCCTGCCACGCGTTCAGCGCGCGAATAC 6349 ||||| | |||||||| |||| ||| | ||| || || ||||| || | || Sbjct 2605 TTCCATAATTTCCACCAACTAAACTTGCTTGATCCGGCTGATCGCTCAGCACGAGTGTAT 2546 Query 6350 TCAACTACGTCAGTGCGTCCGCCGACCCATGACAGGACTCCTTTCATGAACAGGTTCCGC 6409 ||| | || ||||| | ||||||||| | ||||||||||| ||||| || Sbjct 2545 GTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAAACCTTTCATGAAAAGGTTACGT 2486 Query 6410 TCAGGCATTAGCTTGATGTTTTCTACTACCTCACGAGACATCAGGCGAAAATCACCCACG 6469 ||||||| | | || |||||||| || ||||| || |||| ||||| ||||| || Sbjct 2485 TCAGGCAAACACGTAATATTTTCTACGACTTCACGTGATATCAAACGAAAGTCACCAACA 2426 Query 6470 TTTTCCTCGATTTGTGGGTTGCTTATTTTGTTGTGCAGCTTATAGAACATTTCAGCGCTT 6529 | ||| || |||| | | |||| ||||||||||| || | || ||| ||| || || Sbjct 2425 TGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAGTCTGTAAAACCATTCTGCCGTT 2366 Query 6530 TTGCGCTTCAGGTGACCGTCAGTGGAGCGGTCTGTGCGTTTAGCCAGTACCATATCTGCG 6589 || ||||| | | || ||||| | ||||| |||||||||||||||| | ||| || Sbjct 2365 TTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCGTTTAGCCAGTACAACATCAGCA 2306 Query 6590 CCAGTCTGCCAGCGCTGTATCAACTGCGGGATAACATCAATTGGGTCCTGCAGGTCGACG 6649 || | |||| || |||| ||| || || | || | || || | | || || Sbjct 2305 CCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATTTAACGGATCTTATAAATCTACA 2246 Query 6650 TCGATTGGAATCACCGCCTCGCCGGTGGCATGGTCAAGGCCTGCAAATAACGCTGGCTCC 6709 || || | || | || || || |||||||| || | ||||| || | || || || Sbjct 2245 TCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAATCCTGCGAAAAGTGCAGGTTCT 2186 Query 6710 TTTCCGAAATTGCGTGTGAAG--GATAGGGGCACAACAAGCGGATCTGACACGGCCAGCG 6767 || || || || || || ||| |||| | | ||| | ||||| || | | | Sbjct 2185 TTACCAAAGTTTCGAGTAAAGCTGATA--GCCTTAACCATTGGATCAGATATTTCTAATA 2128 Query 6768 CATTGATAATCGACTCTGTAGCGTCTTTGCTGCCGTCATTGATAAATACGATTTCCACCT 6827 |||| || | ||| ||| |||| | || || ||||| || || || | || | | Sbjct 2127 CATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCATTAATGAACACTACCTCTATAT 2068 Query 6828 CA-AACGATTTGAGCGGTTCATATTCTCTGACGGTTTTATAGAAAATAGGTATTGTGTCT 6886 | | ||||| ||| | | ||||||| || | |||||| ||||| ||||| | | | Sbjct 2067 TATATTGATTT-AGCTCTGGAAATTCTCTTACCGATTTATAAAAAATCGGTATGGATTTT 2009 Query 6887 TCTTCATTGAAGACAGGAACCACGAGTGAAATCTTCAT 6924 |||||||| || ||||| || || | ||||||||||| Sbjct 2008 TCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152230479782076