Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_019927.1
Length=47611
Score E
Sequences producing significant alignments: (Bits) Value
seq347 264 3e-66
>seq347
Length=3601
Score = 264 bits (292), Expect = 3e-66
Identities = 588/878 (67%), Gaps = 6/878 (1%)
Strand=Plus/Minus
Query 6050 TCAGTGTAAATTCTTCCAATATATTCCCCCAGGACACCTATCCCTATAAGCTGGACGCCG 6109
||| | || |||| |||||||||||| ||||| || || || || || | || || ||
Sbjct 2845 TCAATATATATTCGTCCAATATATTCACCCAGCACCCCGATACCGATTAATTGCACTCCA 2786
Query 6110 CCAAGGAAAAGGATAGAAACCAGAAGGGATGGATATCCGCGAACCGGGTTGCCAAAGGCA 6169
|||| || || || | |||| | |||||||| || | || ||||| |||||
Sbjct 2785 CCAATAAATAGAATGGCTACCATCAATGATGGATAACCTGGGACTGGGTTACCAAATAGT 2726
Query 6170 AGCGTGTCGACAATCATCCACGCTCCATAGAGAAATGACAGCCCGGCCACTAACAACCCA 6229
| |||| || ||||||| ||||| ||||| || || || || || ||
Sbjct 2725 AATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAAAGTGAAGCGACACCAAAACCG 2666
Query 6230 ATGTACGTCCACATTCTCAGAGGAAAGGTCGAGAAGCTGGTAATACCCTCAAGCGCGAGA 6289
|| |||||||||||||| | ||| | || || || || || || ||||| || | |
Sbjct 2665 ATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGATGTTATCCCTTCAAGAGCTAAA 2606
Query 6290 TTCCAGAGTTTCCACCCGTTAAATTTGGTGCTTCCTGCCACGCGTTCAGCGCGCGAATAC 6349
||||| | |||||||| |||| ||| | ||| || || ||||| || | ||
Sbjct 2605 TTCCATAATTTCCACCAACTAAACTTGCTTGATCCGGCTGATCGCTCAGCACGAGTGTAT 2546
Query 6350 TCAACTACGTCAGTGCGTCCGCCGACCCATGACAGGACTCCTTTCATGAACAGGTTCCGC 6409
||| | || ||||| | ||||||||| | ||||||||||| ||||| ||
Sbjct 2545 GTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAAACCTTTCATGAAAAGGTTACGT 2486
Query 6410 TCAGGCATTAGCTTGATGTTTTCTACTACCTCACGAGACATCAGGCGAAAATCACCCACG 6469
||||||| | | || |||||||| || ||||| || |||| ||||| ||||| ||
Sbjct 2485 TCAGGCAAACACGTAATATTTTCTACGACTTCACGTGATATCAAACGAAAGTCACCAACA 2426
Query 6470 TTTTCCTCGATTTGTGGGTTGCTTATTTTGTTGTGCAGCTTATAGAACATTTCAGCGCTT 6529
| ||| || |||| | | |||| ||||||||||| || | || ||| ||| || ||
Sbjct 2425 TGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAGTCTGTAAAACCATTCTGCCGTT 2366
Query 6530 TTGCGCTTCAGGTGACCGTCAGTGGAGCGGTCTGTGCGTTTAGCCAGTACCATATCTGCG 6589
|| ||||| | | || ||||| | ||||| |||||||||||||||| | ||| ||
Sbjct 2365 TTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCGTTTAGCCAGTACAACATCAGCA 2306
Query 6590 CCAGTCTGCCAGCGCTGTATCAACTGCGGGATAACATCAATTGGGTCCTGCAGGTCGACG 6649
|| | |||| || |||| ||| || || | || | || || | | || ||
Sbjct 2305 CCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATTTAACGGATCTTATAAATCTACA 2246
Query 6650 TCGATTGGAATCACCGCCTCGCCGGTGGCATGGTCAAGGCCTGCAAATAACGCTGGCTCC 6709
|| || | || | || || || |||||||| || | ||||| || | || || ||
Sbjct 2245 TCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAATCCTGCGAAAAGTGCAGGTTCT 2186
Query 6710 TTTCCGAAATTGCGTGTGAAG--GATAGGGGCACAACAAGCGGATCTGACACGGCCAGCG 6767
|| || || || || || ||| |||| | | ||| | ||||| || | | |
Sbjct 2185 TTACCAAAGTTTCGAGTAAAGCTGATA--GCCTTAACCATTGGATCAGATATTTCTAATA 2128
Query 6768 CATTGATAATCGACTCTGTAGCGTCTTTGCTGCCGTCATTGATAAATACGATTTCCACCT 6827
|||| || | ||| ||| |||| | || || ||||| || || || | || | |
Sbjct 2127 CATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCATTAATGAACACTACCTCTATAT 2068
Query 6828 CA-AACGATTTGAGCGGTTCATATTCTCTGACGGTTTTATAGAAAATAGGTATTGTGTCT 6886
| | ||||| ||| | | ||||||| || | |||||| ||||| ||||| | | |
Sbjct 2067 TATATTGATTT-AGCTCTGGAAATTCTCTTACCGATTTATAAAAAATCGGTATGGATTTT 2009
Query 6887 TCTTCATTGAAGACAGGAACCACGAGTGAAATCTTCAT 6924
|||||||| || ||||| || || | |||||||||||
Sbjct 2008 TCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152230479782076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |