Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq116 100 2e-16 seq2 82.4 6e-11 >seq116 Length=862150 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| ||||| || || || ||||| || || ||| ||||| || Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | || ||||||| ||||| || || | || ||| || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| |||||||| ||||||||| || || | ||||| || Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| ||||| ||||||||||| ||| |||| || Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 484297 >seq2 Length=5618958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 ||||||||||||| || || ||||| | || || ||||| ||||| ||| || | Sbjct 3064103 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 3064044 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||| || || | | || ||||| ||||| || ||||| || | || || Sbjct 3064043 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 3063984 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| | | || || || ||||| |||||||||||| || | |||| | Sbjct 3063983 ATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACT 3063924 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||||| ||||| || || || ||||| ||||| | | | || || || ||||| Sbjct 3063923 ATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCATAAT 3063866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425395851344154