Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq162 105 3e-18 seq884 91.5 7e-14 >seq162 Length=626193 Score = 105 bits (116), Expect = 3e-18 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTC- 25979 ||||||| | | ||| || ||||| || ||||||| |||||||||||||| | || | Sbjct 499703 CTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACG 499644 Query 25980 -TCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGC 26038 || || || |||| |||| ||||||||| | | || || || |||||||||| ||| Sbjct 499643 GTC-TTCCTCCTTTCCCGT-ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGC 499586 Query 26039 CATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 || || ||||| || ||||||||| || | |||||| |||||||| || || || Sbjct 499585 CAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATA 499527 >seq884 Length=3025 Score = 91.5 bits (100), Expect = 7e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 36164 CTTGACTCATCATTCTTGCTTGTAAAGCAATTTTAGCTTCTCCACTTTCACCTTCTAACT 36223 |||||||||||||||||||| |||| | | | || || ||||||| |||| | Sbjct 2517 CTTGACTCATCATTCTTGCTGCTAAACCTACATGTAAATCACCTATTTCACCATCTATTT 2458 Query 36224 CAGCTTTTGGAACCATAGCTGCAACACTATCTACGATAATTAAATCAACTTCTCTAGAGT 36283 | ||||||||| | |||||||||| |||||| |||||||||||||| ||| ||| | Sbjct 2457 CGGCTTTTGGAGTTAAAGCTGCAACAGAATCTACTATAATTAAATCAACCGCTCCAGATT 2398 Query 36284 TTATTAAA 36291 | ||||| Sbjct 2397 TAGTTAAA 2390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034677145450