Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq276 125 8e-24 >seq276 Length=329178 Score = 125 bits (138), Expect = 8e-24 Identities = 347/518 (67%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||| || || ||||| || || ||||| || ||||||||||| Sbjct 61428 ACTCCAATAGGTCCCATGCCCGGTCCGCCACCGCCGTGAGGAATGCAAAATGTCTTATGC 61487 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||| |||| | ||||| ||||| || | || || ||| || || || Sbjct 61488 AAATTTAAATGAGAAACATCACTTCCATAATCTCCAGGACGACATAAACCCACTTGCGCG 61547 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| ||||| || || || |||| | ||| | | | || | Sbjct 61548 TTCATATTGGCGCCATCCAGATACACTTGTCCTCCATGGCGATGTATAAGGTCGCAAA-- 61605 Query 138363 TGTCTGATGTTTGT---TTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 |||||| | |||| ||| || || || ||| || |||||||||| ||| | |||| Sbjct 61606 TGTCTG-TAATTGTCTCTTCGAAAACTCCCATAGTTGAGGGATATGTAACCATTACACAT 61664 Query 138420 GAGAGTTCAAATG--TATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 || || | | || | |||| || |||||| | |||| | ||||||||| | | Sbjct 61665 GAAAGATTACTTGCATGTTCA-GA-TGCTTTATCGCGCAGATGTGCCATGTCTATGCTTC 61722 Query 138478 CATCA-TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 ||||| | | || | | | | |||||||||| || ||||| ||| ||||||| Sbjct 61723 CATCAGAAAGTATACGT-ATAGGTTCAACTTTCATGCCGGCCATTTGAGCAGAAGCAGGA 61781 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCC 138595 || || ||||| || || || || | ||| ||||||| | | || | | | | Sbjct 61782 TTCGTACCATGCGCAGAAATGGGAATTAAACAAACATTTCGATGCCCTTCTTTACGGTGC 61841 Query 138596 TTGATGATA--TGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTA 138653 | ||| || ||| | || ||| || || ||||| || || || | || | || Sbjct 61842 -TCATGGTAACTGC--GTATAGCTCGTAGGCCCGCATATTCGCCTTGAGCACCGGAATTG 61898 Query 138654 GGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||||| || ||||| |||| |||||||||| ||||| Sbjct 61899 GGTTGAAACGATATTTTATCATAACCTGTGATTTCACA 61936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578985908109520