Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq162 84.2 3e-11 seq8 84.2 3e-11 >seq162 Length=626193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 233/351 (66%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| ||||| || || ||||||||||| ||||||||||| || ||||| ||| || Sbjct 499869 GAGACCGGAACTCCTTACATGCTTTACAAAGATGCTTGTAATCGCAAAAGTAATCAACAG 499928 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || || || || || | || || ||||| | || || || Sbjct 499929 AATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACGTCGGCT 499988 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 || || | || ||||||||||| |||||||| || | | || ||| || | | || Sbjct 499989 GAAGAAATAGCAGTTTGCAATTTAGCATCAATTGCGTTGAATATGTTTGT-AACG-ACAG 500046 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || | ||||| | | ||||| | ||| | ||||| || | || || || || Sbjct 500047 ATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAAGAACCTC 500105 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCG 76203 ||| | | || || | |||| ||| |||||| | | ||||||||||| | || Sbjct 500106 AACAAAATAATCGATATCAATTACTAT-CCGTTGCCGGAAACCAGAAAGTCTAATTTTCG 500164 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254 || | || |||||||| || || ||||| | || || | | | ||||| Sbjct 500165 TCATCGTCCAATTGGTTTAGGCGTCCAAGGATTTGCTGACGCACTGATTTT 500215 >seq8 Length=3216730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || || ||||| || || || | || || ||| | ||||| ||||| Sbjct 2009148 CCAGGTACTGGCAAAACCCTACTAGCAAAGGCGACTGCAGGAGAAGCTAATGTGCCATTT 2009089 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 ||| | || ||||| | | || | || ||||||||||| |||||| | || || Sbjct 2009088 ATC-ACTGTCTCTGGTTCCGAATTCTTAGAAATGTTTGTTGGCGTGGGTCCATCGAGAGT 2009030 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 |||||| | |||| | | ||||| ||||| || || ||| |||| |||||||| || Sbjct 2009029 GCGCGATATGTTTGCATTGGCCCGTAAAAATGCTCCTTGCATTCTCTTTATTGATGAAAT 2008970 Query 175494 TGATGCGGTGGGC 175506 || ||||| ||| Sbjct 2008969 AGACGCGGTAGGC 2008957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556729010880