Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 165 1e-35 seq32 140 6e-28 seq116 127 4e-24 >seq2 Length=5618958 Score = 165 bits (182), Expect = 1e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||| ||||| | | || ||||||| ||||| || | ||| || || |||||||| Sbjct 3063868 TATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTC 3063927 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||||||||| | ||| || ||||| || || || || || || | |||||||| || Sbjct 3063928 GGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGG 3063987 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || ||||||||||| || ||||||| || | |||| |||||| ||||||| ||| Sbjct 3063988 AGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 3064047 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| | ||| |||||||| || || || ||||| || || ||||||||||| Sbjct 3064048 AACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 >seq32 Length=1919080 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| ||| || || || ||||| || || | ||||| ||||||||| ||||| Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || ||||| ||||| || ||||| |||| || || || || || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| || || || |||| ||||| |||| ||||| || || | || || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | ||| || | |||| ||| | ||| | ||||| ||| || Sbjct 481890 ATTTGCATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTG 481831 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || || ||||| || ||||| || || | |||||| Sbjct 481830 TAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGA 481771 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || | ||||||||||||||| ||||| ||||| | ||| |||||| ||||| Sbjct 481770 TCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGAT 481711 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | |||||| || | || |||||||| || || | || || || || || ||||||||| Sbjct 481710 GGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 481651 Score = 125 bits (138), Expect = 1e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||| || || |||||||| || | || ||||| || || || ||||| |||||||| Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | |||| |||||||| || | |||||||| | ||| |||||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| ||||||||||| ||||||||||| Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| || ||||| || || | ||| || || ||||| || ||||| || Sbjct 484241 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 484182 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | ||| ||||| || || | || ||||| | ||| || Sbjct 484181 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGAT 484122 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | ||||| ||||||||||||||| Sbjct 484121 CGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899634989956320