Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq512 233 3e-56 seq2 127 3e-24 seq116 125 1e-23 seq66 84.2 3e-11 >seq512 Length=181763 Score = 233 bits (258), Expect = 3e-56 Identities = 491/726 (68%), Gaps = 13/726 (2%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 ||||| ||| || | ||| || ||| |||| | ||||| |||| |||| ||| Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783 Query 18032 ATACCTAGTA-GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGA 18090 || || | || ||| || |||| || || | | ||| ||||| || || | || | Sbjct 52782 ATGCCAATTAAGTC-GACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGC 52724 Query 18091 CTCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATA 18150 ||| ||||||| | | | || ||| | ||| | |||| || ||| | Sbjct 52723 ATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACAT 52664 Query 18151 TAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||||| |||||| ||| |||||| |||||||| | ||||| | ||| ||| || Sbjct 52663 TAATAC---CGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAA 52607 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGA 18270 ||||| || |||||||| || | ||| ||||||||||||||||||||||| || | | Sbjct 52606 TGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACT 52547 Query 18271 AAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 |||||| ||||| || ||| ||||| ||||| | | |||| ||||| | | || Sbjct 52546 AAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATG 52487 Query 18331 -GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 | | | ||||||| | | |||||||| | | | | || || |||| | Sbjct 52486 CGATGA-TATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 |||||||||| | || || |||||| ||| | ||||| || ||||| | ||| Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 ||||||||| || || | ||||||| || || ||||||| |||||| | | ||| | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 | | ||||| ||| |||||| ||| || |||||||||||||| ||||| || | Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGA--GAT 18626 | || ||||| ||||| |||| | ||| ||||| ||| || ||| | || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGA- 52189 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||| || || || ||||| || || ||||| ||||| | ||||||||||| | || Sbjct 52188 --TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTT 52131 Query 18687 CGGCCT 18692 | |||| Sbjct 52130 CCGCCT 52125 >seq2 Length=5618958 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | ||||| ||||||||||| || ||||| || | Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || |||||||||||||| |||||||| Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | || || ||||| | |||||| | || ||||| || ||| Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTAT 3063922 Query 156000 AATATATCCAAAGAGGCGAC 156019 || ||| || ||| |||| Sbjct 3063921 AACATACAAAAGGAGTCGAC 3063902 >seq116 Length=862150 Score = 125 bits (138), Expect = 1e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| ||||| ||||||||||| || ||||| ||| Sbjct 474102 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 474161 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| |||||| |||||||| ||||| || || ||||| Sbjct 474162 TCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGAT 474221 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCA 155968 || ||| | ||||||| ||| || ||||| Sbjct 474222 CAGCAACGTTTGATTTTTGCTGGCAAGCA 474250 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| ||||| |||||||| || || || ||||| ||| || Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| ||| ||||| || || || ||||| || |||||||| || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || ||| | |||||| | | || || || ||||| || Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || || | || ||||| || ||||| Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 484297 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || || | || ||||||||||| |||||||| || || || || || Sbjct 481651 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 481710 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || || | |||| || || |||| |||||| |||||||||||||| | || ||||| Sbjct 481711 ATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGA 481770 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | ||||| | ||| || || ||| | ||| || | | || | || || || Sbjct 481771 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTA 481830 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||||| |||| || ||||| || ||| Sbjct 481831 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTA 481867 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| ||||||| ||||| || ||||| || || || || || ||| || Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| || || || ||||| || |||||||| || Sbjct 481943 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 482002 Query 155943 CA 155944 || Sbjct 482003 CA 482004 >seq66 Length=1297373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| || || || | || | || ||||| | |||| Sbjct 241339 AAAATGCAGATTTTCGTGAAAACGTTAACGGGCCATACCCTCACTTTAGATGCCGAACCG 241398 Query 155880 TCTGATAATATTTTAAACG-TGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 | |||| |||| ||||| | |||| || || || ||||| || ||||| || ||| | Sbjct 241399 ACCGATACTATTG-AAACGATTAAAACCAAGATTCAGGATAAGGACGGCATCCCACCAAA 241457 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 || | | |||||||||||||| |||||||| |||||| | || ||| || || Sbjct 241458 TCAGCGCCGTTTGATTTATGCCGGCAAGCAGCTGGAAGATGGTTGCACGTTAATGGACTA 241517 Query 155999 TAATATATCCAAAGAG-GCGACGCTTCATTTAGTGTT 156034 ||| ||| | |||| | |||| || ||||| || || Sbjct 241518 TAACATA-CAAAAGGGTTCGACTCTCCATTTGGTTTT 241553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856209861600