Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq512 149 1e-30 seq116 138 2e-27 seq32 131 3e-25 seq2 125 1e-23 >seq512 Length=181763 Score = 149 bits (164), Expect = 1e-30 Identities = 425/648 (66%), Gaps = 27/648 (4%) Strand=Plus/Minus Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696 |||| | ||| || | |||||| ||| |||| | ||||| |||| ||| | || Sbjct 52843 CAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTT 52784 Query 49697 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 49755 ||| || | ||| | | |||||| || || |||| ||| |||||||| |||| || | Sbjct 52783 CATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAA-AAACTCTTTTTCAATTTTCACGG 52725 Query 49756 cttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgc 49813 | | | | |||||| | || || ||| | ||| |||| ||| | || Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGT--TT--- 52670 Query 49814 atatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 | | ||||| ||||| ||| ||||| || || || | ||||| | ||||||| Sbjct 52669 AAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGA 52610 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || ||||| |||||||||| ||| | || || ||||||||||| ||||| || || | Sbjct 52609 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCC 52550 Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATT 49992 | |||||| ||||| ||||| || || ||||| | | | | ||||| |||| | Sbjct 52549 ACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAA-ATTAGCTG 52491 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 || | ||||||| || |||||| || || || || || | | || || | | Sbjct 52490 AATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 52431 Query 50053 CTATAGCTTTAAATA---ATTCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 | ||||| ||||||| ||||| | ||| |||| | Sbjct 52430 CAATAGCATTAAATAGATATTCACGTTCTTTCTCAT------CCATGATATATGTTTCGA 52377 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | | |||| ||||||||| || || ||| |||||| || |||||||| |||||| Sbjct 52376 TAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGC 52317 Query 50167 GTCTTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 | ||||| | ||||| || || || |||||||| |||||||||||| || Sbjct 52316 AACGAGCTTCAGTTATTTGAACCTCTTGGGAA--AATCGTTCCACTAAATTCTCATTAAC 52259 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATG 50272 ||||||||| ||||| || || || || || || | | ||||||||| Sbjct 52258 AATACCATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATG 52211 >seq116 Length=862150 Score = 138 bits (152), Expect = 2e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | ||||| || || || || |||||||| ||||| || Sbjct 484303 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484244 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||| ||||| ||||||||||| || | ||| || || || || || ||||| Sbjct 484243 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 484184 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || ||||| ||| || || |||| ||||||| ||||||||| | ||| Sbjct 484183 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTG 484124 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || || || ||||||| |||||| |||||| Sbjct 484123 ATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | |||||| || ||||| | || | ||||| || || || || Sbjct 481884 ATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCG 481825 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || ||| ||||| ||||| ||||||||||| || | |||||||| ||| Sbjct 481824 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 481765 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || | ||||||||||||||| |||||| |||| ||||| |||| || || | || Sbjct 481764 GGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCA 481705 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || | || || ||||| ||||| ||||| || | || |||||||||||| Sbjct 481704 ACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 481651 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| || |||||||| || || | || ||||| || || || ||||| |||||||| Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 |||||| ||| ||||| |||| ||| || | ||| ||||| | |||||| ||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||||||||||| | ||| || |||||||| Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| || || | || || || || |||||| Sbjct 484087 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCA 484028 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||| ||||| ||||||||||| || | ||| || || || Sbjct 484027 GACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 483968 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| || || |||| ||| || ||||| Sbjct 483967 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCA 483908 Query 192487 ACTTC 192491 || || Sbjct 483907 ACCTC 483903 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || ||||| || || || ||||| ||| || || |||| Sbjct 482005 CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGT 481946 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| |||||||| || | ||| ||||||||||| || || ||||||| |||||| || Sbjct 481945 ATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTG 481886 Query 192534 CAT 192536 ||| Sbjct 481885 CAT 481883 >seq32 Length=1919080 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| | ||| | || | |||||| || | ||||| ||||||||||| || Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || ||||| || || |||| || || || ||||| Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| || || || || ||||||||| |||| || || | ||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| ||||| | ||| |||||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq2 Length=5618958 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| || ||||| | ||||| | ||| || || || || | ||| || || ||||| Sbjct 3063865 AATTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATA 3063924 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| || || |||| |||||||| || ||||| || || || | |||||||| Sbjct 3063925 GTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATC 3063984 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || ||||||||||| || ||||| || ||||| |||| || || | Sbjct 3063985 TGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 3064044 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | |||||| ||||| ||||| | ||||||| || || |||||||| Sbjct 3064045 CTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458228840100