Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq512 149 1e-30
seq116 138 2e-27
seq32 131 3e-25
seq2 125 1e-23
>seq512
Length=181763
Score = 149 bits (164), Expect = 1e-30
Identities = 425/648 (66%), Gaps = 27/648 (4%)
Strand=Plus/Minus
Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696
|||| | ||| || | |||||| ||| |||| | ||||| |||| ||| | ||
Sbjct 52843 CAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTT 52784
Query 49697 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 49755
||| || | ||| | | |||||| || || |||| ||| |||||||| |||| || |
Sbjct 52783 CATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAA-AAACTCTTTTTCAATTTTCACGG 52725
Query 49756 cttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgc 49813
| | | | |||||| | || || ||| | ||| |||| ||| | ||
Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGT--TT--- 52670
Query 49814 atatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873
| | ||||| ||||| ||| ||||| || || || | ||||| | |||||||
Sbjct 52669 AAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGA 52610
Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933
|| ||||| |||||||||| ||| | || || ||||||||||| ||||| || || |
Sbjct 52609 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCC 52550
Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATT 49992
| |||||| ||||| ||||| || || ||||| | | | | ||||| |||| |
Sbjct 52549 ACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAA-ATTAGCTG 52491
Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052
|| | ||||||| || |||||| || || || || || | | || || | |
Sbjct 52490 AATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 52431
Query 50053 CTATAGCTTTAAATA---ATTCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106
| ||||| ||||||| ||||| | ||| |||| |
Sbjct 52430 CAATAGCATTAAATAGATATTCACGTTCTTTCTCAT------CCATGATATATGTTTCGA 52377
Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166
| | |||| ||||||||| || || ||| |||||| || |||||||| ||||||
Sbjct 52376 TAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGC 52317
Query 50167 GTCTTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224
| ||||| | ||||| || || || |||||||| |||||||||||| ||
Sbjct 52316 AACGAGCTTCAGTTATTTGAACCTCTTGGGAA--AATCGTTCCACTAAATTCTCATTAAC 52259
Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATG 50272
||||||||| ||||| || || || || || || | | |||||||||
Sbjct 52258 AATACCATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATG 52211
>seq116
Length=862150
Score = 138 bits (152), Expect = 2e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378
||||| || || || || | ||||| || || || || |||||||| ||||| ||
Sbjct 484303 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484244
Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438
|||| ||||| ||||| ||||||||||| || | ||| || || || || || |||||
Sbjct 484243 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 484184
Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498
|| || || ||||| ||| || || |||| ||||||| ||||||||| | |||
Sbjct 484183 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTG 484124
Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| ||||| || || || ||||||| |||||| ||||||
Sbjct 484123 ATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085
Score = 134 bits (148), Expect = 3e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | | |||||| || ||||| | || | ||||| || || || ||
Sbjct 481884 ATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCG 481825
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || ||| ||||| ||||| ||||||||||| || | |||||||| |||
Sbjct 481824 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 481765
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| | ||||||||||||||| |||||| |||| ||||| |||| || || | ||
Sbjct 481764 GGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCA 481705
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540
|| || | || || ||||| ||||| ||||| || | || ||||||||||||
Sbjct 481704 ACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 481651
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
||||| || |||||||| || || | || ||||| || || || ||||| ||||||||
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
|||||| ||| ||||| |||| ||| || | ||| ||||| | |||||| |||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||||||||||||| | ||| || ||||||||
Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTT 474102
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| || || ||||| || || | || || || || ||||||
Sbjct 484087 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCA 484028
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| || |||| ||||| ||||| ||||||||||| || | ||| || || ||
Sbjct 484027 GACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 483968
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || ||||| ||| || || |||| ||| || |||||
Sbjct 483967 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCA 483908
Query 192487 ACTTC 192491
|| ||
Sbjct 483907 ACCTC 483903
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || || || || ||||| || || || ||||| ||| || || ||||
Sbjct 482005 CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGT 481946
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|||||| |||||||| || | ||| ||||||||||| || || ||||||| |||||| ||
Sbjct 481945 ATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTG 481886
Query 192534 CAT 192536
|||
Sbjct 481885 CAT 481883
>seq32
Length=1919080
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||||| | ||| | || | |||||| || | ||||| ||||||||||| ||
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || |||| |||||||| || ||||| || || |||| || || || |||||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||| ||||| || || || || ||||||||| |||| || || | ||| ||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| ||||| || || |||| ||||| | ||| |||||||| ||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq2
Length=5618958
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| || ||||| | ||||| | ||| || || || || | ||| || || |||||
Sbjct 3063865 AATTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATA 3063924
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
|| ||||| || || |||| |||||||| || ||||| || || || | ||||||||
Sbjct 3063925 GTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATC 3063984
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
|| || || ||||||||||| || ||||| || ||||| |||| || || |
Sbjct 3063985 TGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 3064044
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | |||||| ||||| ||||| | ||||||| || || ||||||||
Sbjct 3064045 CTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984458228840100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |