Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq32 127 4e-24 seq116 122 2e-22 seq2 114 2e-20 seq512 98.7 2e-15 seq21 84.2 4e-11 >seq32 Length=1919080 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||| | || | || | |||||| || | ||||| |||||||||||| || Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || ||||| ||||| |||| || ||||| ||||| Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || || || ||||||||| ||||| || || | ||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || |||| ||||| | || |||||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || ||||||||||| || | || || || || || || ||||| |||||||| Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 |||||| ||| ||||| |||||||| || | ||| ||||| | |||||| ||||| Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||||||||||||| | || || |||||||| Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || ||||| | || | ||||| ||| || || || || | | || | Sbjct 481869 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 481810 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 | ||||| ||||| |||||||| || || | ||||| || ||||| | |||||||||| Sbjct 481809 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTA 481750 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| |||| ||||| ||||| || || | || || || | || || Sbjct 481749 TCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATA 481690 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| ||||| ||||| || | ||| |||||||||||| Sbjct 481689 GTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 481651 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || || ||||| || || || ||||| ||| || || ||||| Sbjct 482005 CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGT 481946 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| |||||||| || | ||| ||||||||||| || || ||||||| ||||| || Sbjct 481945 ATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTG 481886 Query 172067 CAT 172069 ||| Sbjct 481885 CAT 481883 >seq2 Length=5618958 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || ||||| | || || | ||| || || || || | ||| || || ||||| Sbjct 3063866 ATTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAG 3063925 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||| | || | || |||||||| || ||||| || || || | ||||| || Sbjct 3063926 TCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCT 3063985 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||||||||| || ||||| || ||||| ||||| || || | Sbjct 3063986 GGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 3064045 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | |||||| ||||| ||||| | ||||||| ||| || |||||||| Sbjct 3064046 TCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 >seq512 Length=181763 Score = 98.7 bits (108), Expect = 2e-15 Identities = 405/642 (63%), Gaps = 15/642 (2%) Strand=Plus/Minus Query 38939 CAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATT 38998 |||| | ||| || | |||||| ||| |||| | ||||| |||| ||| | || Sbjct 52843 CAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTT 52784 Query 38999 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 39057 ||| || | ||| | | |||||| || || |||| ||| |||||||| |||| || | Sbjct 52783 CATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAA-AAACTCTTTTTCAATTTTCACGG 52725 Query 39058 cttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgc 39115 | | | | |||||| | || || ||| | ||| |||| ||| | || Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGT--TT--- 52670 Query 39116 atataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 | | | ||| ||||| || ||||| ||||| || | ||||| | ||||||| Sbjct 52669 AAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGA 52610 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 || ||||| |||||||||| ||| | || || ||||||||||| ||||| || || | Sbjct 52609 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCC 52550 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295 | |||||| ||||| || || || || ||||| | | | | ||||| |||| | Sbjct 52549 ACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAA-ATTAGCTG 52491 Query 39296 A-TCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 39354 | | | | ||||| || ||||| || || || || || | | || || | | Sbjct 52490 AATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 52431 Query 39355 CTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39414 | ||||| ||||||| | | Sbjct 52430 CAATAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTA 52371 Query 39415 NAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTG 39474 | ||||||||| || || ||| |||||| || |||||||| |||||| | | Sbjct 52370 AACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAG 52311 Query 39475 CTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 39532 |||| | ||||| || || ||| ||||||| |||||||||||| |||||||| Sbjct 52310 CTTCAGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAACAATACC 52253 Query 39533 ATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATG 39574 ||| ||||| || || || || || |||| | ||||||||| Sbjct 52252 ATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATG 52211 >seq21 Length=2241434 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 239425 GGAAAAATAATTGGATTATCAAAGGGATTACATGGATTTCATATACACGAATATGGAGAT 239484 ||| |||||| ||||||||| |||||||||||||| |||||| | ||||||| || || Sbjct 1381671 GGAGAAATAAATGGATTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGAC 1381730 Query 239485 TTAAGCAATGGTTGCACATCAGCTGGTGAACATTATAATCCTTTTAATA 239533 | || || ||||| || || |||| |||| |||||||| |||| Sbjct 1381731 AATACTAACGGCTGCACTTCTGCCGGTGCGCATTTTAATCCTTGCAATA 1381779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116471690800