Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq32 127 4e-24
seq116 122 2e-22
seq2 114 2e-20
seq512 98.7 2e-15
seq21 84.2 4e-11
>seq32
Length=1919080
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||||| | || | || | |||||| || | ||||| |||||||||||| ||
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|| | || | || |||||||| || ||||| ||||| |||| || ||||| |||||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
||||| ||||| || || || || ||||||||| ||||| || || | ||| ||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| ||||| || || |||| ||||| | || |||||||| ||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq116
Length=862150
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
||||| || ||||||||||| || | || || || || || || ||||| ||||||||
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
|||||| ||| ||||| |||||||| || | ||| ||||| | |||||| |||||
Sbjct 474193 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 474134
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|||||||||||||| | || || ||||||||
Sbjct 474133 CCAGTTAATGTTTTTACAAAGATTTGCATTTT 474102
Score = 120 bits (132), Expect = 5e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914
||||| || ||||| | || | ||||| ||| || || || || | | || |
Sbjct 481869 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 481810
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
| ||||| ||||| |||||||| || || | ||||| || ||||| | ||||||||||
Sbjct 481809 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTA 481750
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| |||||| |||| ||||| ||||| || || | || || || | || ||
Sbjct 481749 TCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATA 481690
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073
||||| ||||| ||||| || | ||| ||||||||||||
Sbjct 481689 GTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 481651
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| || || || ||||| || || || ||||| ||| || || |||||
Sbjct 482005 CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGT 481946
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|||||| |||||||| || | ||| ||||||||||| || || ||||||| ||||| ||
Sbjct 481945 ATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTG 481886
Query 172067 CAT 172069
|||
Sbjct 481885 CAT 481883
>seq2
Length=5618958
Score = 114 bits (126), Expect = 2e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| || ||||| | || || | ||| || || || || | ||| || || |||||
Sbjct 3063866 ATTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAG 3063925
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| ||||| | || | || |||||||| || ||||| || || || | ||||| ||
Sbjct 3063926 TCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCT 3063985
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || || ||||||||||| || ||||| || ||||| ||||| || || |
Sbjct 3063986 GGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 3064045
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| | |||||| ||||| ||||| | ||||||| ||| || ||||||||
Sbjct 3064046 TCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101
>seq512
Length=181763
Score = 98.7 bits (108), Expect = 2e-15
Identities = 405/642 (63%), Gaps = 15/642 (2%)
Strand=Plus/Minus
Query 38939 CAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATT 38998
|||| | ||| || | |||||| ||| |||| | ||||| |||| ||| | ||
Sbjct 52843 CAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTT 52784
Query 38999 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 39057
||| || | ||| | | |||||| || || |||| ||| |||||||| |||| || |
Sbjct 52783 CATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAA-AAACTCTTTTTCAATTTTCACGG 52725
Query 39058 cttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgc 39115
| | | | |||||| | || || ||| | ||| |||| ||| | ||
Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGT--TT--- 52670
Query 39116 atataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175
| | | ||| ||||| || ||||| ||||| || | ||||| | |||||||
Sbjct 52669 AAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGA 52610
Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235
|| ||||| |||||||||| ||| | || || ||||||||||| ||||| || || |
Sbjct 52609 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCC 52550
Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295
| |||||| ||||| || || || || ||||| | | | | ||||| |||| |
Sbjct 52549 ACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAA-ATTAGCTG 52491
Query 39296 A-TCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 39354
| | | | ||||| || ||||| || || || || || | | || || | |
Sbjct 52490 AATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 52431
Query 39355 CTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39414
| ||||| ||||||| | |
Sbjct 52430 CAATAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTA 52371
Query 39415 NAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTG 39474
| ||||||||| || || ||| |||||| || |||||||| |||||| | |
Sbjct 52370 AACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAG 52311
Query 39475 CTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 39532
|||| | ||||| || || ||| ||||||| |||||||||||| ||||||||
Sbjct 52310 CTTCAGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAACAATACC 52253
Query 39533 ATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATG 39574
||| ||||| || || || || || |||| | |||||||||
Sbjct 52252 ATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATG 52211
>seq21
Length=2241434
Score = 84.2 bits (92), Expect = 4e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 239425 GGAAAAATAATTGGATTATCAAAGGGATTACATGGATTTCATATACACGAATATGGAGAT 239484
||| |||||| ||||||||| |||||||||||||| |||||| | ||||||| || ||
Sbjct 1381671 GGAGAAATAAATGGATTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGAC 1381730
Query 239485 TTAAGCAATGGTTGCACATCAGCTGGTGAACATTATAATCCTTTTAATA 239533
| || || ||||| || || |||| |||| |||||||| ||||
Sbjct 1381731 AATACTAACGGCTGCACTTCTGCCGGTGCGCATTTTAATCCTTGCAATA 1381779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905116471690800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |