Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq347 347 3e-91 seq367 107 5e-19 >seq347 Length=3601 Score = 347 bits (384), Expect = 3e-91 Identities = 619/899 (69%), Gaps = 6/899 (1%) Strand=Plus/Minus Query 23379 TATTTGGGTCTATTTTTTACTTCAATATAGATTCTACCTATATATTCTCCGAGAACACCA 23438 ||| | ||||| |||||| ||||||||| |||| || |||||||| || || || || Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807 Query 23439 ATCCCGATCAGTTGCACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCG 23498 || ||||| | |||||||||||| | || || || | ||| | || || ||||| || Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747 Query 23499 CGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAA 23558 | |||||||||||||| | | |||| | |||||||| ||||||| ||| ||| Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687 Query 23559 ATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTT 23618 | || ||| || || ||||| ||||| | | | ||| | ||||||||| | Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627 Query 23619 GTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGA-GATGCCAGC 23677 || || ||||| || || | ||||||||||||||| | | |||| || ||| || || Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGCTTGAT-CCGGC 2568 Query 23678 AACACGCTCTGCGCGTACATATTCCACGACATCCGTCTGACCACCCACCCAGCTCAGTAT 23737 ||||| || || ||| || | || | || | || ||| ||| | Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508 Query 23738 GCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGA 23797 |||||||||||||| || || |||||||| |||| || || || || ||||| || Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448 Query 23798 CATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAA 23857 || | ||||| || || |||| ||| || || ||| | ||||| ||||||||||||| Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388 Query 23858 TTTATAGAACCACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACG 23917 | | || ||||| || || || || || || | | |||||||| | ||||| || Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328 Query 23918 TTTAGCAAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTC 23977 |||||| || || | ||||||||||| ||||||| ||||| | || || || | | Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268 Query 23978 AATTGGGTCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAA 24037 | || |||| | || |||||||| | || | ||||| || | ||||| ||||| Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208 Query 24038 CCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAA--TGACAGCGGAACAACT 24095 ||||| || | || ||||||||||||||||| || ||||| ||| ||| ||| Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150 Query 24096 AGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCA 24155 | || || || | | | | ||||| | ||| || ||| |||| || ||| Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090 Query 24156 TTTATGAATACAATTTCTACTTCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTA 24215 || ||||| || | |||| | |||| | || | |||| | ||||| | ||||| |||| Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030 Query 24216 TAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCAT 24274 || |||| ||||| | || ||||||||| || ||||| || || | || || ||||| Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971 >seq367 Length=84945 Score = 107 bits (118), Expect = 5e-19 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 14087 GACTTTGAAGCCCGGCAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGC 14146 || |||||||| | |||||||| || | || || |||||||||||| || |||||| Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686 Query 14147 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 14206 ||||| || ||| |||| | |||||| | || |||||||| || || |||||||| || Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746 Query 14207 GTCTGTGGTTTCGACAATACCGAACTG 14233 || | ||||| |||||| |||||| Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132595682230044