Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq162 172 5e-38 seq116 170 2e-37 seq2 132 4e-26 >seq162 Length=626193 Score = 172 bits (190), Expect = 5e-38 Identities = 951/1494 (64%), Gaps = 67/1494 (4%) Strand=Plus/Minus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 || |||||| || ||||||| ||||| || || ||||| |||||||| || |||||||| Sbjct 500939 AGTTTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACAT 500880 Query 138210 TCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269 || |||||||| || || ||| | || | ||||| |||| | | | ||| | Sbjct 500879 ACCGGTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACT 500820 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 |||| || | | ||||||||| ||||| || || ||||| ||||| || ||||||| Sbjct 500819 AGGTTGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAAC 500760 Query 138330 GGCCATGTTAATTAAATTTTTACTTTTC----ATCTCCCACACGGTCTTGTATAGATCAC 138385 |||||||| || || |||| | || ||||| || || || || | || Sbjct 500759 AGCCATGTTGATGG----TTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTT 500704 Query 138386 GAATATGTCGCGGTATTGTTGCAATATTTTGAAT---GCTCCCGTTGGCCGCAATGATGC 138442 || | ||||| | | | || ||||| || || |||| || | |||| | Sbjct 500703 TTATGCTTTCAGGTATGGCTTCGATGTTTTGTATTGAGC-CCCGATGTGC-CAATATTAA 500646 Query 138443 GATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGT 138502 | ||| |||||| ||| || | || ||| | |||| || || | || || | Sbjct 500645 GTTTT-TCATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGAT 500587 Query 138503 TTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCT 138562 | | || ||| ||||| | || ||| || || || ||| || ||| | |||| Sbjct 500586 TGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCT 500527 Query 138563 CAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCA 138622 |||| || || ||||| || ||||| ||||| || | ||| || ||||| || || | Sbjct 500526 CAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTA 500467 Query 138623 AAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCGTTCCTTGAGCGACGACCAGTCCCAC 138681 | ||||| || | || | | || || ||| | || || |||||| | ||| Sbjct 500466 GCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTT-TTAAGATCCGACCAATTCCAT 500408 Query 138682 AAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTG 138741 | ||| |||| |||| | ||||||||| || || | || | ||| | ||||| Sbjct 500407 AGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA 500348 Query 138742 CCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCA 138801 ||||| || | ||||| || | | || ||||| || || | || | || Sbjct 500347 CCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCA 500288 Query 138802 CCATAGTAAATAGTTTCGGCAATCTGCTGATTGA-GCAATCGGGCCTCGGCGCTCTCGTA 138860 || || || || ||||| ||| || | ||| | || | | | | | |||| || || Sbjct 500287 CCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAG-CATTTTCGCTTTCATA 500229 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 || || | | | | ||||| || | ||||| ||||| | || | || || Sbjct 500228 GGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACG 500169 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGAT 138977 ||| || | ||| ||| ||| || ||| | ||||| || || | |||||| || Sbjct 500168 ATGACGAAAATTAGAC---TTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTAT 500112 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATG 139036 |||||| | || | | ||| | | | |||| | | | |||||| ||| Sbjct 500111 TTTGTTGAGGTTCTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATAT- 500054 Query 139037 TGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGC 139096 || || || | ||| ||||| | || | ||| || |||| |||| Sbjct 500053 TGT-----TTATCT-----GTCGTT-ACAAACATATTCAACGCAATTGATGCTAAATTGC 500005 Query 139097 ACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 | || || | ||| || | | || | |||||||| ||||| | |||||| ||||| || Sbjct 500004 AAACTGCTATTTCTTCAGCCGACG-TATATTCGACGATTTCTGTACACAAGTTACTGCAT 499946 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 || || || || | ||| |||||||| ||||| || ||||||||||||||||||||||| Sbjct 499945 TTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATG 499886 Query 139216 TACGGTGTGCCAGTTTCCACTTGTG-TCTCTATAAT--GAATTTGAACAAGTCCCTAGCT 139272 || || || || || || ||||| | || ||| | ||| | || |||| | |||| Sbjct 499885 TAAGGAGTTCCGGTCTCTACTTGGGCACTGCATATTGCGAACT---ACTAGTCACGAGCT 499829 Query 139273 TGTATTTGACGCACGTAAAGTTCG--TCGCGCTCGT----ACTTTTC--GTAGAGTTCGT 139324 | |||| || ||||| | || ||||| | |||| ||| | | | Sbjct 499828 TTTATT--------GTTTTGTTCGCTTTGCCCTCGTCTTCATATTTCATGTATAATCTAT 499777 Query 139325 CGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACC 139384 | ||| || || || ||| | | | | || || | |||||||| || |||| Sbjct 499776 CAAATTTGTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTAGAGACC 499717 Query 139385 ATACGC-CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGC 139443 | | || | | |||| || | ||||||||| ||| || ||||||| ||| | | Sbjct 499716 A-ATGCTCATCAGCCTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCATAAAAT 499658 Query 139444 AAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAA 139503 ||||| || || | || ||| ||| | || ||||| ||| || || || ||| Sbjct 499657 AAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAATTCGAAA 499598 Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCT 139560 | || || ||||| || || | || || || | || || ||||| |||||| Sbjct 499597 ATATCTGCATGCCAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCT 499538 Query 139561 TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 || ||||| | || || |||| ||||| | || ||||| || | |||||| Sbjct 499537 TGGTCGACATAACGGGCAACATTGTTGAACAGACGTAACATAGGAACAAGACCG 499484 >seq116 Length=862150 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| | ||||| ||||| || || | ||||||||| | | Sbjct 484086 ATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCA 484145 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || |||| ||||| ||||| ||||| ||||| || ||||| || || Sbjct 484146 GACACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || |||||| |||| ||| | | |||| ||||| || Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||||||||| | |||||||| Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 Score = 143 bits (158), Expect = 2e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | || || |||||||| || | || || | ||||| | Sbjct 481655 ATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTG-AGCCATC 481713 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || || | |||||| ||| || ||||| ||||||||| | || || |||| Sbjct 481714 CGACACTATTGAGAATGTTAAAACTAAA-ATTCAAGATAAAGAAGGAGTCCCACCAGATC 481772 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||||||||||||||||| || |||||| |||| || | | | || || || | Sbjct 481773 AACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTACA 481832 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||| || ||||||||||| || ||||| || || ||||| || ||| Sbjct 481833 ACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882 Score = 127 bits (140), Expect = 2e-24 Identities = 123/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 24774 AAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGA 24833 ||||| |||| ||||| ||||| ||||| ||||| || ||||| || || || ||||||| Sbjct 483929 AAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGA 483987 Query 24834 TCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||||| || |||||| |||| ||| | | |||| ||||| ||||| ||||||| Sbjct 483988 TCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGG 484047 Query 24894 AATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| ||| | || ||||||||||| | ||||| || Sbjct 484048 AATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 484084 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || ||||||||||| | ||||| ||| | | Sbjct 474105 ATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 474164 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| || ||||| || || || ||||| Sbjct 474165 GATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAG 474224 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 ||||||||||| ||||| || || || Sbjct 474225 CAACGTTTGATTTTTGCTGGCAAGCA 474250 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| | ||||||||||| || || | || |||||| | | Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942 Query 24764 GACACAGTAG-AAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | | ||||| |||| ||||| ||||| ||||| ||||| || ||||| || || Sbjct 481943 GATACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCA 482001 Query 24823 ACAACGTTT 24831 || ||||| Sbjct 482002 GCAGCGTTT 482010 >seq2 Length=5618958 Score = 132 bits (146), Expect = 4e-26 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || || ||||||||||| | ||||| || | || Sbjct 3064098 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 3064039 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || || |||||||| || ||||| |||||| Sbjct 3064038 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 3063979 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || || |||| ||| | | | | || || |||||| Sbjct 3063978 CAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAAC 3063919 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || |||||||| ||||| | |||||||| | || | || || ||| || ||||||| Sbjct 3063918 ATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCATAATTGAGCCA 3063859 Query 24944 ACG 24946 || Sbjct 3063858 TCG 3063856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887893459280