Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq340 150 1e-31
seq116 96.9 3e-15
seq32 86.0 5e-12
>seq340
Length=248669
Score = 150 bits (166), Expect = 1e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262
||| || ||||||| ||||| || || | |||||| || | ||| ||| ||| |
Sbjct 100137 CGGTGGATTTTTCAAAATGAAAGTATTCACCTTATGATTGACCTTAAGCAAGCCATGAAA 100078
Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322
|||||||||||| || ||| | ||| | | || ||||| || || | || |||||
Sbjct 100077 ACCGCATGCTTTACAAGACTGCGATATAGTTTGATTCTTAGCTGAAACTGTAAGATCAGT 100018
Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382
||||| || || ||||| ||||| |||||||| ||||| |||||||||||||| || ||
Sbjct 100017 TTCCGGATTATCGCATTCAGGACATAACACAAATTTGCGTATGAAACCATCAAGGAGATC 99958
Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
||||| ||| | | |||||||||||| || || || || || |||||
Sbjct 99957 TTGTAATTTAGCTGCGTCGTGGGAGCCATTAACTATAAAACGCTCGTT 99910
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|| ||||| | ||| ||||| || |||| || || || ||||| || || || ||| ||
Sbjct 99822 TTATAATCAAACTGAGTTTGAGCACCCAATTCACAACCAAAGTATTTGGTTGGATAAGTG 99763
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| || ||||| | || || | ||||| ||| || || || || || || |||||
Sbjct 99762 GCTGGTCGTCCTATGGCTCGTGCCACTTCGGCCATATTAACTATAACCGTTTTAATGCCA 99703
Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| |
Sbjct 99702 TTGCCTTTACCTTCGACTTTGGCTTGCAAA--CGCGGCATTTTGTAACGATAGAAAATAT 99645
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATC 34644
| | ||||| ||||| || || || | ||||||
Sbjct 99644 CGGTAACATTACGGTTCACATTAACCGAACCCATC 99610
>seq116
Length=862150
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
||||||||||||||| |||||||| ||||| ||||| || || | ||| || ||
Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| ||| ||| | || ||| || || ||||| ||||| | || || ||
Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | ||| || |||||| |||| |||| | | ||| || | ||||||||
Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
||| ||||| |||||||| | ||| |||||||
Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 484297
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326
||||||||||| || || || || || || || || ||||| || ||| | || |||
Sbjct 481649 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAG 481708
Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386
|| ||| ||| | | | || ||| || ||| || |||||||| || ||
Sbjct 481709 CCATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
||||||||| | | || | ||| || |||||| |||| ||| | | ||| | | ||
Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||||||||| |||||||| || | || |||| ||| | |||| || ||
Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881
>seq32
Length=1919080
Score = 86.0 bits (94), Expect = 5e-12
Identities = 163/240 (68%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || ||||| ||||| |||| ||||| ||||| || | || || ||
Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| ||| | |||||| |||||| |||||||| || | || ||
Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| ||| || | |||| || || || || |||| |||| | | ||| || | |||||
Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAAA 110509
|| |||||||||||||| || || || | ||| | | ||||||| ||| ||| |||
Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGAGCAAAAAAA 39183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412832915618918
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |