Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq340 150 1e-31 seq116 96.9 3e-15 seq32 86.0 5e-12 >seq340 Length=248669 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| || ||||||| ||||| || || | |||||| || | ||| ||| ||| | Sbjct 100137 CGGTGGATTTTTCAAAATGAAAGTATTCACCTTATGATTGACCTTAAGCAAGCCATGAAA 100078 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 |||||||||||| || ||| | ||| | | || ||||| || || | || ||||| Sbjct 100077 ACCGCATGCTTTACAAGACTGCGATATAGTTTGATTCTTAGCTGAAACTGTAAGATCAGT 100018 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| || || ||||| ||||| |||||||| ||||| |||||||||||||| || || Sbjct 100017 TTCCGGATTATCGCATTCAGGACATAACACAAATTTGCGTATGAAACCATCAAGGAGATC 99958 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| ||| | | |||||||||||| || || || || || ||||| Sbjct 99957 TTGTAATTTAGCTGCGTCGTGGGAGCCATTAACTATAAAACGCTCGTT 99910 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||| | ||| ||||| || |||| || || || ||||| || || || ||| || Sbjct 99822 TTATAATCAAACTGAGTTTGAGCACCCAATTCACAACCAAAGTATTTGGTTGGATAAGTG 99763 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| | || || | ||||| ||| || || || || || || ||||| Sbjct 99762 GCTGGTCGTCCTATGGCTCGTGCCACTTCGGCCATATTAACTATAACCGTTTTAATGCCA 99703 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| | Sbjct 99702 TTGCCTTTACCTTCGACTTTGGCTTGCAAA--CGCGGCATTTTGTAACGATAGAAAATAT 99645 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATC 34644 | | ||||| ||||| || || || | |||||| Sbjct 99644 CGGTAACATTACGGTTCACATTAACCGAACCCATC 99610 >seq116 Length=862150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| |||||||| ||||| ||||| || || | ||| || || Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | || ||| || || ||||| ||||| | || || || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || |||||| |||| |||| | | ||| || | |||||||| Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| |||||||| | ||| ||||||| Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 484297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||||||||||| || || || || || || || || ||||| || ||| | || ||| Sbjct 481649 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAG 481708 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || ||| ||| | | | || ||| || ||| || |||||||| || || Sbjct 481709 CCATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||||||| | | || | ||| || |||||| |||| ||| | | ||| | | || Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| |||||||| || | || |||| ||| | |||| || || Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881 >seq32 Length=1919080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| ||||| |||| ||||| ||||| || | || || || Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | |||||| |||||| |||||||| || | || || Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| || | |||| || || || || |||| |||| | | ||| || | ||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAAA 110509 || |||||||||||||| || || || | ||| | | ||||||| ||| ||| ||| Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGAGCAAAAAAA 39183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832915618918